Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06348 and H281DRAFT_06349 are separated by 136 nucleotides H281DRAFT_06349 and H281DRAFT_06350 are separated by 89 nucleotides H281DRAFT_06350 and H281DRAFT_06351 are separated by 285 nucleotides
H281DRAFT_06348: H281DRAFT_06348 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 22,255 to 23,613
_06348
H281DRAFT_06349: H281DRAFT_06349 - hypothetical protein, at 23,750 to 23,968
_06349
H281DRAFT_06350: H281DRAFT_06350 - hypothetical protein, at 24,058 to 24,387
_06350
H281DRAFT_06351: H281DRAFT_06351 - succinate semialdehyde dehydrogenase (EC 1.2.1.16), at 24,673 to 26,148
_06351
Position (kb) 24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 23.260 kb on + strand, within H281DRAFT_06348 at 23.334 kb on + strand, within H281DRAFT_06348 at 23.735 kb on + strand at 23.736 kb on - strand at 23.795 kb on + strand, within H281DRAFT_06349 at 24.235 kb on + strand, within H281DRAFT_06350 at 24.236 kb on - strand, within H281DRAFT_06350 at 24.385 kb on + strand at 24.488 kb on + strand at 24.488 kb on + strand at 24.489 kb on - strand at 24.489 kb on - strand at 24.489 kb on - strand at 24.489 kb on - strand at 24.568 kb on + strand at 24.568 kb on + strand at 24.604 kb on - strand at 25.057 kb on + strand, within H281DRAFT_06351
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 23,260 + H281DRAFT_06348 0.74 -0.2 23,334 + H281DRAFT_06348 0.79 +0.0 23,735 + +0.9 23,736 - +1.2 23,795 + H281DRAFT_06349 0.21 -1.4 24,235 + H281DRAFT_06350 0.54 -3.3 24,236 - H281DRAFT_06350 0.54 -0.4 24,385 + -0.5 24,488 + -0.2 24,488 + +0.1 24,489 - +0.2 24,489 - -0.2 24,489 - +1.1 24,489 - +0.6 24,568 + -0.4 24,568 + +1.2 24,604 - -0.9 25,057 + H281DRAFT_06351 0.26 -0.8
Or see this region's nucleotide sequence