Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06115 and H281DRAFT_06116 are separated by 73 nucleotides H281DRAFT_06116 and H281DRAFT_06117 are separated by 152 nucleotides
H281DRAFT_06115: H281DRAFT_06115 - Protein of unknown function (DUF1479), at 134,670 to 135,920
_06115
H281DRAFT_06116: H281DRAFT_06116 - transcriptional regulator, AraC family, at 135,994 to 137,157
_06116
H281DRAFT_06117: H281DRAFT_06117 - citrate synthase, at 137,310 to 138,611
_06117
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 135.082 kb on + strand, within H281DRAFT_06115 at 135.241 kb on + strand, within H281DRAFT_06115 at 135.241 kb on + strand, within H281DRAFT_06115 at 135.515 kb on - strand, within H281DRAFT_06115 at 135.515 kb on - strand, within H281DRAFT_06115 at 135.515 kb on - strand, within H281DRAFT_06115 at 135.515 kb on - strand, within H281DRAFT_06115 at 135.515 kb on - strand, within H281DRAFT_06115 at 135.559 kb on + strand, within H281DRAFT_06115 at 135.560 kb on - strand, within H281DRAFT_06115 at 135.560 kb on - strand, within H281DRAFT_06115 at 135.613 kb on + strand, within H281DRAFT_06115 at 135.743 kb on - strand, within H281DRAFT_06115 at 135.743 kb on - strand, within H281DRAFT_06115 at 135.743 kb on - strand, within H281DRAFT_06115 at 135.844 kb on + strand at 135.844 kb on + strand at 135.844 kb on + strand at 135.845 kb on - strand at 135.911 kb on + strand at 135.911 kb on + strand at 135.912 kb on - strand at 135.912 kb on - strand at 135.912 kb on - strand at 135.935 kb on - strand at 135.969 kb on + strand at 135.969 kb on + strand at 135.970 kb on - strand at 135.999 kb on + strand at 136.000 kb on - strand at 136.000 kb on - strand at 136.000 kb on - strand at 136.079 kb on - strand at 136.120 kb on + strand, within H281DRAFT_06116 at 136.121 kb on - strand, within H281DRAFT_06116 at 136.121 kb on - strand, within H281DRAFT_06116 at 136.278 kb on + strand, within H281DRAFT_06116 at 136.278 kb on + strand, within H281DRAFT_06116 at 136.579 kb on - strand, within H281DRAFT_06116 at 136.844 kb on - strand, within H281DRAFT_06116 at 136.844 kb on - strand, within H281DRAFT_06116 at 136.879 kb on + strand, within H281DRAFT_06116 at 136.880 kb on - strand, within H281DRAFT_06116 at 136.884 kb on - strand, within H281DRAFT_06116 at 136.884 kb on - strand, within H281DRAFT_06116 at 136.947 kb on - strand, within H281DRAFT_06116 at 137.142 kb on + strand at 137.142 kb on + strand at 137.192 kb on - strand at 137.192 kb on - strand at 137.192 kb on - strand at 137.272 kb on - strand at 137.311 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 135,082 + H281DRAFT_06115 0.33 -0.2 135,241 + H281DRAFT_06115 0.46 -0.7 135,241 + H281DRAFT_06115 0.46 +0.4 135,515 - H281DRAFT_06115 0.68 -1.1 135,515 - H281DRAFT_06115 0.68 +0.1 135,515 - H281DRAFT_06115 0.68 +0.3 135,515 - H281DRAFT_06115 0.68 +0.5 135,515 - H281DRAFT_06115 0.68 -0.4 135,559 + H281DRAFT_06115 0.71 -0.5 135,560 - H281DRAFT_06115 0.71 +0.0 135,560 - H281DRAFT_06115 0.71 -0.1 135,613 + H281DRAFT_06115 0.75 +0.3 135,743 - H281DRAFT_06115 0.86 +0.5 135,743 - H281DRAFT_06115 0.86 +1.3 135,743 - H281DRAFT_06115 0.86 -0.1 135,844 + +1.2 135,844 + +0.6 135,844 + +1.0 135,845 - +0.3 135,911 + -0.9 135,911 + +0.6 135,912 - +0.1 135,912 - +0.9 135,912 - +0.2 135,935 - -0.2 135,969 + -0.0 135,969 + +0.8 135,970 - +0.1 135,999 + +0.4 136,000 - -0.5 136,000 - +0.1 136,000 - +0.9 136,079 - +2.6 136,120 + H281DRAFT_06116 0.11 +0.7 136,121 - H281DRAFT_06116 0.11 -2.6 136,121 - H281DRAFT_06116 0.11 -0.7 136,278 + H281DRAFT_06116 0.24 +0.3 136,278 + H281DRAFT_06116 0.24 -1.2 136,579 - H281DRAFT_06116 0.50 +0.3 136,844 - H281DRAFT_06116 0.73 +0.8 136,844 - H281DRAFT_06116 0.73 -0.2 136,879 + H281DRAFT_06116 0.76 +0.2 136,880 - H281DRAFT_06116 0.76 -1.0 136,884 - H281DRAFT_06116 0.76 +0.0 136,884 - H281DRAFT_06116 0.76 +0.7 136,947 - H281DRAFT_06116 0.82 -0.4 137,142 + -0.6 137,142 + +1.0 137,192 - -3.8 137,192 - -0.1 137,192 - +0.1 137,272 - -0.1 137,311 + -0.2
Or see this region's nucleotide sequence