Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05998 and H281DRAFT_05999 are separated by 158 nucleotides H281DRAFT_05999 and H281DRAFT_06000 are separated by 87 nucleotides H281DRAFT_06000 and H281DRAFT_06001 are separated by 95 nucleotides H281DRAFT_06001 and H281DRAFT_06002 overlap by 4 nucleotides
H281DRAFT_05998: H281DRAFT_05998 - hypothetical protein, at 744 to 1,064
_05998
H281DRAFT_05999: H281DRAFT_05999 - hypothetical protein, at 1,223 to 1,927
_05999
H281DRAFT_06000: H281DRAFT_06000 - transcriptional regulator, AraC family, at 2,015 to 2,806
_06000
H281DRAFT_06001: H281DRAFT_06001 - hypothetical protein, at 2,902 to 3,186
_06001
H281DRAFT_06002: H281DRAFT_06002 - NADPH:quinone reductase, at 3,183 to 4,136
_06002
Position (kb) 2
3 Strain fitness (log2 ratio) -1
0
1 at 1.184 kb on + strand at 1.185 kb on - strand at 1.287 kb on - strand at 1.361 kb on + strand, within H281DRAFT_05999 at 1.361 kb on + strand, within H281DRAFT_05999 at 1.617 kb on + strand, within H281DRAFT_05999 at 1.617 kb on + strand, within H281DRAFT_05999 at 1.618 kb on - strand, within H281DRAFT_05999 at 1.618 kb on - strand at 1.739 kb on - strand, within H281DRAFT_05999 at 1.974 kb on - strand at 2.047 kb on - strand at 2.110 kb on - strand, within H281DRAFT_06000 at 2.114 kb on + strand, within H281DRAFT_06000 at 2.836 kb on + strand at 2.837 kb on - strand at 2.878 kb on + strand at 3.330 kb on + strand, within H281DRAFT_06002 at 3.586 kb on + strand, within H281DRAFT_06002
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 1,184 + +0.4 1,185 - +0.6 1,287 - +0.7 1,361 + H281DRAFT_05999 0.20 -0.1 1,361 + H281DRAFT_05999 0.20 +0.7 1,617 + H281DRAFT_05999 0.56 -0.6 1,617 + H281DRAFT_05999 0.56 +0.4 1,618 - H281DRAFT_05999 0.56 +0.4 1,618 - -0.8 1,739 - H281DRAFT_05999 0.73 +0.1 1,974 - -0.8 2,047 - +0.1 2,110 - H281DRAFT_06000 0.12 -0.1 2,114 + H281DRAFT_06000 0.12 -0.9 2,836 + +0.9 2,837 - -0.1 2,878 + +0.4 3,330 + H281DRAFT_06002 0.15 +0.9 3,586 + H281DRAFT_06002 0.42 +1.0
Or see this region's nucleotide sequence