Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05756 and H281DRAFT_05757 are separated by 72 nucleotides H281DRAFT_05757 and H281DRAFT_05758 are separated by 70 nucleotides H281DRAFT_05758 and H281DRAFT_05759 are separated by 419 nucleotides H281DRAFT_05759 and H281DRAFT_05760 are separated by 94 nucleotides
H281DRAFT_05756: H281DRAFT_05756 - RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG, at 31,634 to 32,368
_05756
H281DRAFT_05757: H281DRAFT_05757 - Predicted nuclease of the RNAse H fold, HicB family, at 32,441 to 32,851
_05757
H281DRAFT_05758: H281DRAFT_05758 - HicA toxin of toxin-antitoxin,, at 32,922 to 33,029
_05758
H281DRAFT_05759: H281DRAFT_05759 - flagella synthesis protein FlgN, at 33,449 to 33,895
_05759
H281DRAFT_05760: H281DRAFT_05760 - anti-sigma-28 factor, FlgM family, at 33,990 to 34,343
_05760
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1 at 32.061 kb on - strand, within H281DRAFT_05756 at 32.225 kb on + strand, within H281DRAFT_05756 at 32.387 kb on + strand at 32.588 kb on - strand, within H281DRAFT_05757 at 33.029 kb on + strand at 33.030 kb on - strand at 33.118 kb on - strand at 33.182 kb on + strand at 33.183 kb on - strand at 33.225 kb on + strand at 33.225 kb on + strand at 33.405 kb on - strand at 33.489 kb on + strand at 33.546 kb on + strand, within H281DRAFT_05759 at 33.547 kb on - strand, within H281DRAFT_05759 at 33.858 kb on + strand at 33.975 kb on - strand at 33.991 kb on + strand at 33.991 kb on + strand at 33.992 kb on - strand at 33.992 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 32,061 - H281DRAFT_05756 0.58 +0.5 32,225 + H281DRAFT_05756 0.80 +0.5 32,387 + +1.1 32,588 - H281DRAFT_05757 0.36 -0.4 33,029 + -0.8 33,030 - -0.7 33,118 - -0.5 33,182 + +1.5 33,183 - +0.2 33,225 + -0.2 33,225 + -0.1 33,405 - -1.6 33,489 + +0.3 33,546 + H281DRAFT_05759 0.22 -1.6 33,547 - H281DRAFT_05759 0.22 -0.2 33,858 + -2.4 33,975 - -0.2 33,991 + -1.1 33,991 + -0.4 33,992 - -0.1 33,992 - -0.3
Or see this region's nucleotide sequence