Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05063 and H281DRAFT_05064 are separated by 93 nucleotides H281DRAFT_05064 and H281DRAFT_05065 are separated by 226 nucleotides
H281DRAFT_05063: H281DRAFT_05063 - 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit, at 2,731 to 4,689
_05063
H281DRAFT_05064: H281DRAFT_05064 - DNA-binding transcriptional regulator, LysR family, at 4,783 to 5,682
_05064
H281DRAFT_05065: H281DRAFT_05065 - Putative SOS response-associated peptidase YedK, at 5,909 to 6,871
_05065
Position (kb) 4
5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3.986 kb on + strand, within H281DRAFT_05063 at 4.257 kb on + strand, within H281DRAFT_05063 at 4.499 kb on + strand at 4.693 kb on + strand at 4.764 kb on - strand at 4.797 kb on + strand at 4.807 kb on + strand at 5.011 kb on - strand, within H281DRAFT_05064 at 5.011 kb on - strand, within H281DRAFT_05064 at 5.281 kb on + strand, within H281DRAFT_05064 at 5.351 kb on - strand, within H281DRAFT_05064 at 5.351 kb on - strand, within H281DRAFT_05064 at 5.391 kb on - strand, within H281DRAFT_05064 at 5.596 kb on + strand at 5.686 kb on + strand at 5.687 kb on - strand at 5.956 kb on + strand at 6.036 kb on + strand, within H281DRAFT_05065 at 6.103 kb on + strand, within H281DRAFT_05065 at 6.105 kb on + strand, within H281DRAFT_05065 at 6.106 kb on - strand, within H281DRAFT_05065 at 6.377 kb on - strand, within H281DRAFT_05065 at 6.421 kb on + strand, within H281DRAFT_05065 at 6.440 kb on + strand, within H281DRAFT_05065 at 6.549 kb on - strand, within H281DRAFT_05065 at 6.562 kb on - strand, within H281DRAFT_05065
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 3,986 + H281DRAFT_05063 0.64 -0.4 4,257 + H281DRAFT_05063 0.78 -0.2 4,499 + +0.2 4,693 + -0.1 4,764 - -0.6 4,797 + +0.0 4,807 + +0.3 5,011 - H281DRAFT_05064 0.25 +0.3 5,011 - H281DRAFT_05064 0.25 +0.2 5,281 + H281DRAFT_05064 0.55 +0.4 5,351 - H281DRAFT_05064 0.63 +1.8 5,351 - H281DRAFT_05064 0.63 -1.2 5,391 - H281DRAFT_05064 0.68 -2.8 5,596 + +0.9 5,686 + -0.8 5,687 - -1.0 5,956 + -0.3 6,036 + H281DRAFT_05065 0.13 -1.6 6,103 + H281DRAFT_05065 0.20 +0.3 6,105 + H281DRAFT_05065 0.20 +0.0 6,106 - H281DRAFT_05065 0.20 -0.3 6,377 - H281DRAFT_05065 0.49 +0.7 6,421 + H281DRAFT_05065 0.53 +0.2 6,440 + H281DRAFT_05065 0.55 -1.4 6,549 - H281DRAFT_05065 0.66 +0.5 6,562 - H281DRAFT_05065 0.68 -1.2
Or see this region's nucleotide sequence