Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04762 and H281DRAFT_04763 are separated by 296 nucleotides H281DRAFT_04763 and H281DRAFT_04764 overlap by 4 nucleotides
H281DRAFT_04762: H281DRAFT_04762 - transcriptional regulator, LysR family, at 177,268 to 178,161
_04762
H281DRAFT_04763: H281DRAFT_04763 - hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 178,458 to 179,441
_04763
H281DRAFT_04764: H281DRAFT_04764 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 179,438 to 180,676
_04764
Position (kb) 178
179
180 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.529 kb on + strand, within H281DRAFT_04762 at 177.529 kb on - strand, within H281DRAFT_04762 at 177.635 kb on + strand, within H281DRAFT_04762 at 177.635 kb on + strand, within H281DRAFT_04762 at 177.925 kb on + strand, within H281DRAFT_04762 at 177.926 kb on - strand, within H281DRAFT_04762 at 177.926 kb on - strand, within H281DRAFT_04762 at 177.935 kb on - strand, within H281DRAFT_04762 at 178.176 kb on + strand at 178.177 kb on - strand at 178.467 kb on - strand at 178.573 kb on - strand, within H281DRAFT_04763 at 179.268 kb on + strand, within H281DRAFT_04763 at 179.353 kb on - strand at 179.410 kb on + strand at 179.533 kb on + strand at 179.533 kb on + strand at 179.534 kb on - strand at 179.921 kb on + strand, within H281DRAFT_04764 at 179.922 kb on - strand, within H281DRAFT_04764
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 177,529 + H281DRAFT_04762 0.29 +0.4 177,529 - H281DRAFT_04762 0.29 +0.5 177,635 + H281DRAFT_04762 0.41 +0.2 177,635 + H281DRAFT_04762 0.41 +0.5 177,925 + H281DRAFT_04762 0.73 -2.0 177,926 - H281DRAFT_04762 0.74 +0.6 177,926 - H281DRAFT_04762 0.74 -0.0 177,935 - H281DRAFT_04762 0.75 +0.1 178,176 + -0.6 178,177 - +2.5 178,467 - -0.7 178,573 - H281DRAFT_04763 0.12 +0.6 179,268 + H281DRAFT_04763 0.82 +0.6 179,353 - +0.4 179,410 + +0.3 179,533 + +0.5 179,533 + +0.6 179,534 - +1.0 179,921 + H281DRAFT_04764 0.39 +0.8 179,922 - H281DRAFT_04764 0.39 -0.7
Or see this region's nucleotide sequence