Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04758 and H281DRAFT_04759 are separated by 368 nucleotides H281DRAFT_04759 and H281DRAFT_04760 are separated by 90 nucleotides
H281DRAFT_04758: H281DRAFT_04758 - Predicted periplasmic or secreted lipoprotein, at 174,285 to 174,638
_04758
H281DRAFT_04759: H281DRAFT_04759 - hypothetical protein, at 175,007 to 175,255
_04759
H281DRAFT_04760: H281DRAFT_04760 - hypothetical protein, at 175,346 to 176,134
_04760
Position (kb) 175
176 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 174.226 kb on + strand at 174.233 kb on - strand at 174.245 kb on + strand at 174.269 kb on + strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.351 kb on + strand, within H281DRAFT_04758 at 174.351 kb on + strand, within H281DRAFT_04758 at 174.352 kb on - strand, within H281DRAFT_04758 at 174.352 kb on - strand, within H281DRAFT_04758 at 174.636 kb on + strand at 174.637 kb on - strand at 174.637 kb on - strand at 174.734 kb on + strand at 174.792 kb on - strand at 174.976 kb on - strand at 174.980 kb on + strand at 174.981 kb on - strand at 174.981 kb on - strand at 175.016 kb on - strand at 175.016 kb on - strand at 175.188 kb on - strand, within H281DRAFT_04759 at 175.188 kb on - strand, within H281DRAFT_04759 at 175.371 kb on - strand at 175.537 kb on + strand, within H281DRAFT_04760 at 175.537 kb on + strand, within H281DRAFT_04760 at 175.538 kb on - strand, within H281DRAFT_04760 at 175.843 kb on - strand, within H281DRAFT_04760 at 175.974 kb on + strand, within H281DRAFT_04760 at 175.974 kb on + strand, within H281DRAFT_04760 at 176.009 kb on + strand, within H281DRAFT_04760 at 176.010 kb on - strand, within H281DRAFT_04760 at 176.010 kb on - strand, within H281DRAFT_04760 at 176.010 kb on - strand, within H281DRAFT_04760 at 176.010 kb on - strand, within H281DRAFT_04760 at 176.107 kb on - strand at 176.119 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 174,226 + +0.3 174,233 - -0.5 174,245 + -0.1 174,269 + -1.7 174,270 - +0.3 174,270 - +0.2 174,270 - +0.9 174,351 + H281DRAFT_04758 0.19 -3.0 174,351 + H281DRAFT_04758 0.19 -0.2 174,352 - H281DRAFT_04758 0.19 +0.1 174,352 - H281DRAFT_04758 0.19 -0.1 174,636 + +0.5 174,637 - +0.2 174,637 - -0.2 174,734 + +0.5 174,792 - +0.3 174,976 - +0.1 174,980 + +0.9 174,981 - -0.5 174,981 - -0.0 175,016 - +0.0 175,016 - +0.7 175,188 - H281DRAFT_04759 0.73 +0.0 175,188 - H281DRAFT_04759 0.73 +1.2 175,371 - -0.3 175,537 + H281DRAFT_04760 0.24 +0.7 175,537 + H281DRAFT_04760 0.24 +1.1 175,538 - H281DRAFT_04760 0.24 -0.4 175,843 - H281DRAFT_04760 0.63 +0.2 175,974 + H281DRAFT_04760 0.80 -0.4 175,974 + H281DRAFT_04760 0.80 -4.0 176,009 + H281DRAFT_04760 0.84 +0.2 176,010 - H281DRAFT_04760 0.84 -1.1 176,010 - H281DRAFT_04760 0.84 -1.1 176,010 - H281DRAFT_04760 0.84 +1.6 176,010 - H281DRAFT_04760 0.84 -0.9 176,107 - -0.7 176,119 + -0.9
Or see this region's nucleotide sequence