Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04215

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04214 and H281DRAFT_04215 are separated by 226 nucleotidesH281DRAFT_04215 and H281DRAFT_04216 are separated by 198 nucleotidesH281DRAFT_04216 and H281DRAFT_04217 are separated by 157 nucleotides H281DRAFT_04214: H281DRAFT_04214 - transcriptional regulator, GntR family, at 333,905 to 334,480 _04214 H281DRAFT_04215: H281DRAFT_04215 - galactonate dehydratase, at 334,707 to 335,855 _04215 H281DRAFT_04216: H281DRAFT_04216 - hypothetical protein, at 336,054 to 336,356 _04216 H281DRAFT_04217: H281DRAFT_04217 - putative copper resistance protein D, at 336,514 to 337,443 _04217 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 333.723 kb on + strandat 333.723 kb on + strandat 333.723 kb on + strandat 333.723 kb on + strandat 333.724 kb on - strandat 333.863 kb on - strandat 333.863 kb on - strandat 334.003 kb on + strand, within H281DRAFT_04214at 334.004 kb on - strand, within H281DRAFT_04214at 334.004 kb on - strandat 334.175 kb on - strand, within H281DRAFT_04214at 334.260 kb on + strand, within H281DRAFT_04214at 334.260 kb on + strand, within H281DRAFT_04214at 334.260 kb on + strand, within H281DRAFT_04214at 334.329 kb on + strand, within H281DRAFT_04214at 334.330 kb on - strand, within H281DRAFT_04214at 334.355 kb on + strand, within H281DRAFT_04214at 334.356 kb on - strand, within H281DRAFT_04214at 334.356 kb on - strand, within H281DRAFT_04214at 334.481 kb on + strandat 334.481 kb on + strandat 334.481 kb on + strandat 334.481 kb on + strandat 334.482 kb on - strandat 334.519 kb on - strandat 334.540 kb on + strandat 334.582 kb on + strandat 334.583 kb on - strandat 334.633 kb on - strandat 334.636 kb on - strandat 334.643 kb on + strandat 334.660 kb on - strandat 334.706 kb on + strandat 334.707 kb on - strandat 334.857 kb on + strand, within H281DRAFT_04215at 334.857 kb on + strand, within H281DRAFT_04215at 334.858 kb on - strand, within H281DRAFT_04215at 334.908 kb on + strand, within H281DRAFT_04215at 335.055 kb on + strand, within H281DRAFT_04215at 335.055 kb on + strand, within H281DRAFT_04215at 335.055 kb on + strand, within H281DRAFT_04215at 335.056 kb on - strand, within H281DRAFT_04215at 335.056 kb on - strand, within H281DRAFT_04215at 335.056 kb on - strand, within H281DRAFT_04215at 335.056 kb on - strand, within H281DRAFT_04215at 335.056 kb on - strand, within H281DRAFT_04215at 335.274 kb on - strand, within H281DRAFT_04215at 335.274 kb on - strand, within H281DRAFT_04215at 335.274 kb on - strand, within H281DRAFT_04215at 335.313 kb on + strand, within H281DRAFT_04215at 335.313 kb on + strand, within H281DRAFT_04215at 335.538 kb on + strand, within H281DRAFT_04215at 335.539 kb on - strand, within H281DRAFT_04215at 335.539 kb on - strand, within H281DRAFT_04215at 335.616 kb on + strand, within H281DRAFT_04215at 335.617 kb on - strand, within H281DRAFT_04215at 335.617 kb on - strand, within H281DRAFT_04215at 335.628 kb on - strand, within H281DRAFT_04215at 335.655 kb on + strand, within H281DRAFT_04215at 335.655 kb on + strand, within H281DRAFT_04215at 335.656 kb on - strand, within H281DRAFT_04215at 335.710 kb on - strand, within H281DRAFT_04215at 335.776 kb on + strandat 335.777 kb on - strandat 335.777 kb on - strandat 336.075 kb on + strandat 336.075 kb on + strandat 336.076 kb on - strandat 336.153 kb on + strand, within H281DRAFT_04216at 336.154 kb on - strand, within H281DRAFT_04216at 336.154 kb on - strand, within H281DRAFT_04216at 336.213 kb on + strand, within H281DRAFT_04216at 336.252 kb on + strand, within H281DRAFT_04216at 336.292 kb on + strandat 336.292 kb on + strand, within H281DRAFT_04216at 336.292 kb on + strand, within H281DRAFT_04216at 336.293 kb on - strand, within H281DRAFT_04216at 336.293 kb on - strand, within H281DRAFT_04216at 336.293 kb on - strandat 336.293 kb on - strand, within H281DRAFT_04216at 336.314 kb on - strand, within H281DRAFT_04216at 336.314 kb on - strand, within H281DRAFT_04216at 336.455 kb on + strandat 336.455 kb on + strandat 336.456 kb on - strandat 336.456 kb on - strandat 336.456 kb on - strandat 336.463 kb on + strandat 336.463 kb on + strandat 336.464 kb on - strandat 336.543 kb on + strandat 336.600 kb on - strandat 336.618 kb on + strand, within H281DRAFT_04217at 336.618 kb on + strand, within H281DRAFT_04217at 336.618 kb on + strand, within H281DRAFT_04217at 336.619 kb on - strand, within H281DRAFT_04217at 336.619 kb on - strand, within H281DRAFT_04217

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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333,723 + -2.3
333,723 + +0.4
333,723 + +0.2
333,723 + -0.8
333,724 - +0.3
333,863 - +0.9
333,863 - +0.2
334,003 + H281DRAFT_04214 0.17 -0.2
334,004 - H281DRAFT_04214 0.17 -1.4
334,004 - -0.8
334,175 - H281DRAFT_04214 0.47 -0.6
334,260 + H281DRAFT_04214 0.62 -1.9
334,260 + H281DRAFT_04214 0.62 +0.5
334,260 + H281DRAFT_04214 0.62 +0.5
334,329 + H281DRAFT_04214 0.74 -1.3
334,330 - H281DRAFT_04214 0.74 -2.5
334,355 + H281DRAFT_04214 0.78 -0.3
334,356 - H281DRAFT_04214 0.78 +0.0
334,356 - H281DRAFT_04214 0.78 -0.4
334,481 + +0.2
334,481 + +0.6
334,481 + -1.2
334,481 + -1.7
334,482 - -0.9
334,519 - +0.2
334,540 + +0.2
334,582 + -0.2
334,583 - -0.1
334,633 - +0.4
334,636 - -0.9
334,643 + +0.7
334,660 - -0.4
334,706 + -0.1
334,707 - -0.4
334,857 + H281DRAFT_04215 0.13 -0.5
334,857 + H281DRAFT_04215 0.13 +0.2
334,858 - H281DRAFT_04215 0.13 +0.7
334,908 + H281DRAFT_04215 0.17 +1.1
335,055 + H281DRAFT_04215 0.30 +0.1
335,055 + H281DRAFT_04215 0.30 -0.3
335,055 + H281DRAFT_04215 0.30 -0.5
335,056 - H281DRAFT_04215 0.30 -0.1
335,056 - H281DRAFT_04215 0.30 +0.2
335,056 - H281DRAFT_04215 0.30 +0.1
335,056 - H281DRAFT_04215 0.30 -0.2
335,056 - H281DRAFT_04215 0.30 +0.0
335,274 - H281DRAFT_04215 0.49 +0.4
335,274 - H281DRAFT_04215 0.49 +0.4
335,274 - H281DRAFT_04215 0.49 +0.0
335,313 + H281DRAFT_04215 0.53 -1.1
335,313 + H281DRAFT_04215 0.53 +0.6
335,538 + H281DRAFT_04215 0.72 -1.0
335,539 - H281DRAFT_04215 0.72 -1.8
335,539 - H281DRAFT_04215 0.72 -1.4
335,616 + H281DRAFT_04215 0.79 -0.0
335,617 - H281DRAFT_04215 0.79 +1.0
335,617 - H281DRAFT_04215 0.79 +0.4
335,628 - H281DRAFT_04215 0.80 -0.8
335,655 + H281DRAFT_04215 0.83 -1.5
335,655 + H281DRAFT_04215 0.83 -0.6
335,656 - H281DRAFT_04215 0.83 +0.0
335,710 - H281DRAFT_04215 0.87 -0.5
335,776 + -0.5
335,777 - -1.0
335,777 - +2.6
336,075 + -1.3
336,075 + -0.5
336,076 - +1.3
336,153 + H281DRAFT_04216 0.33 +0.4
336,154 - H281DRAFT_04216 0.33 +1.1
336,154 - H281DRAFT_04216 0.33 +0.2
336,213 + H281DRAFT_04216 0.52 +2.0
336,252 + H281DRAFT_04216 0.65 +0.5
336,292 + +0.5
336,292 + H281DRAFT_04216 0.79 +0.6
336,292 + H281DRAFT_04216 0.79 +1.0
336,293 - H281DRAFT_04216 0.79 +0.7
336,293 - H281DRAFT_04216 0.79 -0.6
336,293 - -1.7
336,293 - H281DRAFT_04216 0.79 +0.0
336,314 - H281DRAFT_04216 0.86 +0.6
336,314 - H281DRAFT_04216 0.86 -0.1
336,455 + +0.7
336,455 + -0.3
336,456 - +0.3
336,456 - +0.6
336,456 - -0.0
336,463 + +0.9
336,463 + +0.2
336,464 - +0.8
336,543 + +0.2
336,600 - -1.3
336,618 + H281DRAFT_04217 0.11 -0.8
336,618 + H281DRAFT_04217 0.11 -0.4
336,618 + H281DRAFT_04217 0.11 -0.9
336,619 - H281DRAFT_04217 0.11 +0.2
336,619 - H281DRAFT_04217 0.11 +0.1

Or see this region's nucleotide sequence