Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04098 and H281DRAFT_04099 are separated by 128 nucleotides H281DRAFT_04099 and H281DRAFT_04100 are separated by 71 nucleotides H281DRAFT_04100 and H281DRAFT_04101 are separated by 174 nucleotides
H281DRAFT_04098: H281DRAFT_04098 - Predicted acyl-CoA transferases/carnitine dehydratase, at 205,848 to 207,266
_04098
H281DRAFT_04099: H281DRAFT_04099 - citrate synthase, at 207,395 to 208,624
_04099
H281DRAFT_04100: H281DRAFT_04100 - Protein of unknown function (DUF2917), at 208,696 to 209,001
_04100
H281DRAFT_04101: H281DRAFT_04101 - transcriptional regulator, GntR family, at 209,176 to 210,588
_04101
Position (kb) 207
208
209 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 206.925 kb on - strand, within H281DRAFT_04098 at 207.160 kb on - strand at 207.465 kb on - strand at 207.465 kb on - strand at 207.465 kb on - strand at 207.465 kb on - strand at 207.470 kb on + strand at 207.470 kb on + strand at 207.471 kb on - strand at 207.471 kb on - strand at 207.471 kb on - strand at 207.471 kb on - strand at 207.471 kb on - strand at 208.207 kb on - strand, within H281DRAFT_04099 at 208.601 kb on + strand at 208.653 kb on - strand at 208.816 kb on - strand, within H281DRAFT_04100 at 208.871 kb on + strand, within H281DRAFT_04100 at 208.871 kb on + strand, within H281DRAFT_04100 at 209.034 kb on + strand at 209.063 kb on - strand at 209.317 kb on + strand at 209.317 kb on + strand at 209.350 kb on + strand, within H281DRAFT_04101 at 209.350 kb on + strand, within H281DRAFT_04101 at 209.351 kb on - strand, within H281DRAFT_04101 at 209.374 kb on + strand, within H281DRAFT_04101 at 209.404 kb on + strand, within H281DRAFT_04101 at 209.582 kb on + strand, within H281DRAFT_04101 at 209.624 kb on - strand, within H281DRAFT_04101
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 206,925 - H281DRAFT_04098 0.76 -0.3 207,160 - +0.5 207,465 - +0.3 207,465 - -1.8 207,465 - -0.1 207,465 - +0.6 207,470 + -0.4 207,470 + +0.6 207,471 - +0.7 207,471 - +0.3 207,471 - +0.3 207,471 - -0.5 207,471 - +0.9 208,207 - H281DRAFT_04099 0.66 +0.7 208,601 + +0.3 208,653 - -1.7 208,816 - H281DRAFT_04100 0.39 +1.0 208,871 + H281DRAFT_04100 0.57 -0.7 208,871 + H281DRAFT_04100 0.57 -0.2 209,034 + +1.1 209,063 - -2.1 209,317 + -0.2 209,317 + +0.1 209,350 + H281DRAFT_04101 0.12 -0.8 209,350 + H281DRAFT_04101 0.12 +0.7 209,351 - H281DRAFT_04101 0.12 +0.6 209,374 + H281DRAFT_04101 0.14 +0.4 209,404 + H281DRAFT_04101 0.16 -0.0 209,582 + H281DRAFT_04101 0.29 +2.9 209,624 - H281DRAFT_04101 0.32 +0.2
Or see this region's nucleotide sequence