Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03868 and H281DRAFT_03869 are separated by 381 nucleotides H281DRAFT_03869 and H281DRAFT_03870 are separated by 142 nucleotides H281DRAFT_03870 and H281DRAFT_03871 are separated by 398 nucleotides
H281DRAFT_03868: H281DRAFT_03868 - transcriptional regulator, XRE family with cupin sensor, at 397,027 to 397,671
_03868
H281DRAFT_03869: H281DRAFT_03869 - hypothetical protein, at 398,053 to 398,502
_03869
H281DRAFT_03870: H281DRAFT_03870 - hypothetical protein, at 398,645 to 398,878
_03870
H281DRAFT_03871: H281DRAFT_03871 - hypothetical protein, at 399,277 to 400,998
_03871
Position (kb) 398
399 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 397.164 kb on - strand, within H281DRAFT_03868 at 397.199 kb on + strand, within H281DRAFT_03868 at 397.200 kb on - strand, within H281DRAFT_03868 at 397.693 kb on + strand at 397.694 kb on - strand at 397.825 kb on - strand at 398.030 kb on + strand at 398.030 kb on + strand at 398.088 kb on + strand at 398.143 kb on + strand, within H281DRAFT_03869 at 398.296 kb on + strand, within H281DRAFT_03869 at 398.314 kb on - strand, within H281DRAFT_03869 at 398.382 kb on + strand, within H281DRAFT_03869 at 398.402 kb on + strand, within H281DRAFT_03869 at 398.403 kb on - strand, within H281DRAFT_03869 at 398.590 kb on - strand at 398.612 kb on + strand at 398.612 kb on + strand at 398.613 kb on - strand at 398.809 kb on + strand, within H281DRAFT_03870 at 398.809 kb on + strand, within H281DRAFT_03870 at 398.809 kb on + strand, within H281DRAFT_03870 at 398.809 kb on + strand, within H281DRAFT_03870 at 398.810 kb on - strand, within H281DRAFT_03870 at 398.916 kb on - strand at 398.916 kb on - strand at 398.916 kb on - strand at 399.221 kb on + strand at 399.276 kb on + strand at 399.292 kb on + strand at 399.293 kb on - strand at 399.403 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 397,164 - H281DRAFT_03868 0.21 -1.4 397,199 + H281DRAFT_03868 0.27 -1.0 397,200 - H281DRAFT_03868 0.27 +0.2 397,693 + +0.0 397,694 - +0.4 397,825 - +0.2 398,030 + +0.2 398,030 + -1.2 398,088 + -1.8 398,143 + H281DRAFT_03869 0.20 +0.0 398,296 + H281DRAFT_03869 0.54 +0.7 398,314 - H281DRAFT_03869 0.58 +0.2 398,382 + H281DRAFT_03869 0.73 +0.1 398,402 + H281DRAFT_03869 0.78 -0.0 398,403 - H281DRAFT_03869 0.78 -0.1 398,590 - +0.1 398,612 + +0.9 398,612 + +0.4 398,613 - +0.8 398,809 + H281DRAFT_03870 0.70 -0.7 398,809 + H281DRAFT_03870 0.70 +0.0 398,809 + H281DRAFT_03870 0.70 -0.3 398,809 + H281DRAFT_03870 0.70 -1.1 398,810 - H281DRAFT_03870 0.71 -0.8 398,916 - +0.2 398,916 - +1.5 398,916 - +0.2 399,221 + +0.2 399,276 + +1.8 399,292 + +0.5 399,293 - -2.9 399,403 - +0.7
Or see this region's nucleotide sequence