Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03855 and H281DRAFT_03856 overlap by 4 nucleotides H281DRAFT_03856 and H281DRAFT_03857 are separated by 32 nucleotides H281DRAFT_03857 and H281DRAFT_03858 are separated by 216 nucleotides
H281DRAFT_03855: H281DRAFT_03855 - Sugar phosphate isomerase/epimerase, at 384,195 to 385,043
_03855
H281DRAFT_03856: H281DRAFT_03856 - 3-oxoacyl-[acyl-carrier protein] reductase, at 385,040 to 385,780
_03856
H281DRAFT_03857: H281DRAFT_03857 - MFS transporter, ACS family, D-galactonate transporter, at 385,813 to 387,129
_03857
H281DRAFT_03858: H281DRAFT_03858 - DNA-binding transcriptional regulator, LysR family, at 387,346 to 388,260
_03858
Position (kb) 385
386
387
388 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 384.846 kb on + strand, within H281DRAFT_03855 at 384.846 kb on + strand, within H281DRAFT_03855 at 384.847 kb on - strand, within H281DRAFT_03855 at 385.076 kb on - strand at 385.076 kb on - strand at 385.299 kb on - strand, within H281DRAFT_03856 at 385.429 kb on - strand, within H281DRAFT_03856 at 385.482 kb on + strand, within H281DRAFT_03856 at 385.781 kb on - strand at 385.825 kb on - strand at 386.128 kb on + strand, within H281DRAFT_03857 at 386.129 kb on - strand, within H281DRAFT_03857 at 386.315 kb on + strand, within H281DRAFT_03857 at 386.436 kb on + strand, within H281DRAFT_03857 at 386.600 kb on + strand, within H281DRAFT_03857 at 386.600 kb on + strand, within H281DRAFT_03857 at 386.667 kb on - strand, within H281DRAFT_03857 at 386.709 kb on + strand, within H281DRAFT_03857 at 386.709 kb on + strand, within H281DRAFT_03857 at 386.909 kb on + strand, within H281DRAFT_03857 at 386.909 kb on + strand, within H281DRAFT_03857 at 387.014 kb on + strand at 387.015 kb on - strand at 387.049 kb on + strand at 387.050 kb on - strand at 387.254 kb on + strand at 387.255 kb on - strand at 387.281 kb on + strand at 387.282 kb on - strand at 387.304 kb on + strand at 387.318 kb on + strand at 387.374 kb on + strand at 387.427 kb on + strand at 387.427 kb on + strand at 387.427 kb on + strand at 387.450 kb on + strand, within H281DRAFT_03858 at 387.566 kb on - strand, within H281DRAFT_03858 at 387.622 kb on - strand, within H281DRAFT_03858 at 387.989 kb on + strand, within H281DRAFT_03858 at 387.990 kb on - strand, within H281DRAFT_03858 at 388.106 kb on + strand, within H281DRAFT_03858 at 388.106 kb on + strand, within H281DRAFT_03858 at 388.107 kb on - strand, within H281DRAFT_03858
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 384,846 + H281DRAFT_03855 0.77 -0.7 384,846 + H281DRAFT_03855 0.77 +0.7 384,847 - H281DRAFT_03855 0.77 +0.3 385,076 - -0.6 385,076 - -0.3 385,299 - H281DRAFT_03856 0.35 +0.3 385,429 - H281DRAFT_03856 0.52 -1.6 385,482 + H281DRAFT_03856 0.60 +0.4 385,781 - +1.1 385,825 - -0.8 386,128 + H281DRAFT_03857 0.24 -0.8 386,129 - H281DRAFT_03857 0.24 +0.2 386,315 + H281DRAFT_03857 0.38 +0.2 386,436 + H281DRAFT_03857 0.47 +0.1 386,600 + H281DRAFT_03857 0.60 +0.6 386,600 + H281DRAFT_03857 0.60 -0.7 386,667 - H281DRAFT_03857 0.65 +0.0 386,709 + H281DRAFT_03857 0.68 +3.0 386,709 + H281DRAFT_03857 0.68 -0.3 386,909 + H281DRAFT_03857 0.83 +0.5 386,909 + H281DRAFT_03857 0.83 -0.9 387,014 + -0.9 387,015 - -1.0 387,049 + +1.5 387,050 - +0.6 387,254 + -0.2 387,255 - -0.3 387,281 + +0.5 387,282 - +0.7 387,304 + +0.2 387,318 + -1.0 387,374 + +0.7 387,427 + -0.9 387,427 + +0.1 387,427 + -1.6 387,450 + H281DRAFT_03858 0.11 -0.4 387,566 - H281DRAFT_03858 0.24 -0.2 387,622 - H281DRAFT_03858 0.30 -1.4 387,989 + H281DRAFT_03858 0.70 +1.9 387,990 - H281DRAFT_03858 0.70 -0.6 388,106 + H281DRAFT_03858 0.83 +1.6 388,106 + H281DRAFT_03858 0.83 -2.0 388,107 - H281DRAFT_03858 0.83 +1.0
Or see this region's nucleotide sequence