Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03427 and H281DRAFT_03428 are separated by 3 nucleotides H281DRAFT_03428 and H281DRAFT_03429 are separated by 0 nucleotides H281DRAFT_03429 and H281DRAFT_03430 are separated by 64 nucleotides
H281DRAFT_03427: H281DRAFT_03427 - cytochrome bo3 quinol oxidase subunit 1 apoprotein, at 502,112 to 504,127
_03427
H281DRAFT_03428: H281DRAFT_03428 - cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-), at 504,131 to 504,739
_03428
H281DRAFT_03429: H281DRAFT_03429 - cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-), at 504,740 to 505,072
_03429
H281DRAFT_03430: H281DRAFT_03430 - hypothetical protein, at 505,137 to 506,141
_03430
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1 at 503.764 kb on + strand, within H281DRAFT_03427 at 503.765 kb on - strand, within H281DRAFT_03427 at 503.862 kb on - strand, within H281DRAFT_03427 at 503.888 kb on - strand, within H281DRAFT_03427 at 504.030 kb on - strand at 504.033 kb on - strand at 504.068 kb on - strand at 504.215 kb on + strand, within H281DRAFT_03428 at 504.663 kb on + strand, within H281DRAFT_03428 at 504.748 kb on + strand at 504.748 kb on + strand at 504.749 kb on - strand at 504.990 kb on - strand, within H281DRAFT_03429 at 505.043 kb on - strand at 505.096 kb on + strand at 505.096 kb on + strand at 505.097 kb on - strand at 505.097 kb on - strand at 505.129 kb on - strand at 505.197 kb on + strand at 505.244 kb on - strand, within H281DRAFT_03430 at 505.444 kb on + strand, within H281DRAFT_03430 at 505.465 kb on + strand, within H281DRAFT_03430 at 505.690 kb on + strand, within H281DRAFT_03430 at 505.729 kb on + strand, within H281DRAFT_03430 at 505.780 kb on + strand, within H281DRAFT_03430 at 505.996 kb on + strand, within H281DRAFT_03430 at 505.996 kb on + strand, within H281DRAFT_03430 at 506.000 kb on + strand, within H281DRAFT_03430 at 506.001 kb on - strand, within H281DRAFT_03430
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 503,764 + H281DRAFT_03427 0.82 +0.2 503,765 - H281DRAFT_03427 0.82 +0.8 503,862 - H281DRAFT_03427 0.87 -0.2 503,888 - H281DRAFT_03427 0.88 -0.5 504,030 - -0.0 504,033 - +0.6 504,068 - -1.9 504,215 + H281DRAFT_03428 0.14 +0.2 504,663 + H281DRAFT_03428 0.87 +0.7 504,748 + +0.0 504,748 + -0.2 504,749 - +0.7 504,990 - H281DRAFT_03429 0.75 +0.7 505,043 - +0.4 505,096 + +0.5 505,096 + -0.2 505,097 - +0.1 505,097 - -0.2 505,129 - +0.1 505,197 + -0.5 505,244 - H281DRAFT_03430 0.11 -1.8 505,444 + H281DRAFT_03430 0.31 +0.4 505,465 + H281DRAFT_03430 0.33 +0.1 505,690 + H281DRAFT_03430 0.55 +0.9 505,729 + H281DRAFT_03430 0.59 +0.9 505,780 + H281DRAFT_03430 0.64 -0.1 505,996 + H281DRAFT_03430 0.85 +0.3 505,996 + H281DRAFT_03430 0.85 -0.1 506,000 + H281DRAFT_03430 0.86 -0.1 506,001 - H281DRAFT_03430 0.86 -1.5
Or see this region's nucleotide sequence