Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03401 and H281DRAFT_03402 are separated by 84 nucleotides H281DRAFT_03402 and H281DRAFT_03403 are separated by 472 nucleotides H281DRAFT_03403 and H281DRAFT_03404 are separated by 22 nucleotides H281DRAFT_03404 and H281DRAFT_03405 are separated by 92 nucleotides
H281DRAFT_03401: H281DRAFT_03401 - hypothetical protein, at 471,205 to 471,786
_03401
H281DRAFT_03402: H281DRAFT_03402 - hypothetical protein, at 471,871 to 472,188
_03402
H281DRAFT_03403: H281DRAFT_03403 - Predicted ATPase, at 472,661 to 474,166
_03403
H281DRAFT_03404: H281DRAFT_03404 - Response regulator, at 474,189 to 474,563
_03404
H281DRAFT_03405: H281DRAFT_03405 - catalase, at 474,656 to 476,119
_03405
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -1
0
1 at 471.758 kb on + strand at 472.401 kb on + strand at 472.402 kb on - strand at 472.562 kb on - strand at 472.619 kb on - strand at 473.260 kb on + strand, within H281DRAFT_03403 at 473.262 kb on + strand, within H281DRAFT_03403 at 473.389 kb on - strand, within H281DRAFT_03403 at 473.389 kb on - strand, within H281DRAFT_03403 at 473.461 kb on + strand, within H281DRAFT_03403 at 474.636 kb on + strand at 474.873 kb on + strand, within H281DRAFT_03405 at 475.036 kb on - strand, within H281DRAFT_03405 at 475.036 kb on - strand, within H281DRAFT_03405
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 471,758 + +0.9 472,401 + +0.0 472,402 - +0.5 472,562 - +0.1 472,619 - +0.7 473,260 + H281DRAFT_03403 0.40 +0.7 473,262 + H281DRAFT_03403 0.40 +0.4 473,389 - H281DRAFT_03403 0.48 +0.2 473,389 - H281DRAFT_03403 0.48 +1.3 473,461 + H281DRAFT_03403 0.53 -0.5 474,636 + +0.5 474,873 + H281DRAFT_03405 0.15 -0.0 475,036 - H281DRAFT_03405 0.26 -0.7 475,036 - H281DRAFT_03405 0.26 -0.3
Or see this region's nucleotide sequence