Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03210 and H281DRAFT_03211 are separated by 10 nucleotides H281DRAFT_03211 and H281DRAFT_03212 are separated by 8 nucleotides H281DRAFT_03212 and H281DRAFT_03213 are separated by 164 nucleotides H281DRAFT_03213 and H281DRAFT_03214 are separated by 306 nucleotides
H281DRAFT_03210: H281DRAFT_03210 - transcriptional regulator, AraC family, at 258,461 to 259,228
_03210
H281DRAFT_03211: H281DRAFT_03211 - hypothetical protein, at 259,239 to 259,568
_03211
H281DRAFT_03212: H281DRAFT_03212 - hypothetical protein, at 259,577 to 259,837
_03212
H281DRAFT_03213: H281DRAFT_03213 - hypothetical protein, at 260,002 to 260,334
_03213
H281DRAFT_03214: H281DRAFT_03214 - 4-hydroxyphenylpyruvate dioxygenase, at 260,641 to 262,524
_03214
Position (kb) 260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 259.011 kb on - strand, within H281DRAFT_03210 at 259.023 kb on + strand, within H281DRAFT_03210 at 259.024 kb on - strand, within H281DRAFT_03210 at 259.024 kb on - strand, within H281DRAFT_03210 at 259.024 kb on - strand, within H281DRAFT_03210 at 259.105 kb on - strand, within H281DRAFT_03210 at 259.238 kb on + strand at 259.238 kb on + strand at 259.263 kb on + strand at 259.264 kb on - strand at 259.264 kb on - strand at 259.264 kb on - strand at 259.270 kb on - strand at 259.356 kb on + strand, within H281DRAFT_03211 at 259.357 kb on - strand, within H281DRAFT_03211 at 259.357 kb on - strand, within H281DRAFT_03211 at 259.467 kb on + strand, within H281DRAFT_03211 at 259.467 kb on + strand, within H281DRAFT_03211 at 259.566 kb on + strand at 259.578 kb on + strand at 259.579 kb on - strand at 259.817 kb on - strand at 260.067 kb on - strand, within H281DRAFT_03213 at 260.075 kb on + strand, within H281DRAFT_03213 at 260.176 kb on - strand, within H281DRAFT_03213 at 260.232 kb on + strand, within H281DRAFT_03213 at 260.334 kb on + strand at 260.334 kb on + strand at 260.335 kb on - strand at 260.486 kb on + strand at 260.498 kb on - strand at 260.498 kb on - strand at 260.763 kb on - strand at 260.809 kb on - strand at 260.876 kb on + strand, within H281DRAFT_03214 at 260.969 kb on - strand, within H281DRAFT_03214 at 260.988 kb on + strand, within H281DRAFT_03214 at 260.989 kb on - strand, within H281DRAFT_03214 at 261.302 kb on + strand, within H281DRAFT_03214
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 259,011 - H281DRAFT_03210 0.72 -0.7 259,023 + H281DRAFT_03210 0.73 +0.1 259,024 - H281DRAFT_03210 0.73 +0.3 259,024 - H281DRAFT_03210 0.73 -1.0 259,024 - H281DRAFT_03210 0.73 +0.2 259,105 - H281DRAFT_03210 0.84 +0.6 259,238 + -0.1 259,238 + -0.3 259,263 + +0.7 259,264 - +2.7 259,264 - -0.7 259,264 - +0.5 259,270 - +0.8 259,356 + H281DRAFT_03211 0.35 +1.0 259,357 - H281DRAFT_03211 0.36 -0.3 259,357 - H281DRAFT_03211 0.36 +0.0 259,467 + H281DRAFT_03211 0.69 -0.1 259,467 + H281DRAFT_03211 0.69 -0.6 259,566 + -0.5 259,578 + +0.0 259,579 - -3.5 259,817 - +0.4 260,067 - H281DRAFT_03213 0.20 +0.0 260,075 + H281DRAFT_03213 0.22 +1.9 260,176 - H281DRAFT_03213 0.52 +1.1 260,232 + H281DRAFT_03213 0.69 -1.4 260,334 + -0.1 260,334 + -0.3 260,335 - -0.0 260,486 + +0.6 260,498 - -2.0 260,498 - -1.1 260,763 - -1.8 260,809 - +0.3 260,876 + H281DRAFT_03214 0.12 +0.2 260,969 - H281DRAFT_03214 0.17 -0.3 260,988 + H281DRAFT_03214 0.18 +0.7 260,989 - H281DRAFT_03214 0.18 +0.5 261,302 + H281DRAFT_03214 0.35 +0.2
Or see this region's nucleotide sequence