Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03008 and H281DRAFT_03009 are separated by 101 nucleotides H281DRAFT_03009 and H281DRAFT_03010 are separated by 82 nucleotides H281DRAFT_03010 and H281DRAFT_03011 are separated by 63 nucleotides
H281DRAFT_03008: H281DRAFT_03008 - formyl-CoA transferase, at 34,033 to 35,280
_03008
H281DRAFT_03009: H281DRAFT_03009 - acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein, at 35,382 to 37,577
_03009
H281DRAFT_03010: H281DRAFT_03010 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 37,660 to 38,481
_03010
H281DRAFT_03011: H281DRAFT_03011 - NAD(P) transhydrogenase subunit beta, at 38,545 to 39,579
_03011
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 34.426 kb on + strand, within H281DRAFT_03008 at 34.427 kb on - strand, within H281DRAFT_03008 at 34.828 kb on + strand, within H281DRAFT_03008 at 34.950 kb on + strand, within H281DRAFT_03008 at 35.279 kb on - strand at 35.288 kb on - strand at 35.299 kb on - strand at 35.388 kb on + strand at 35.909 kb on + strand, within H281DRAFT_03009 at 36.137 kb on - strand, within H281DRAFT_03009 at 36.984 kb on + strand, within H281DRAFT_03009 at 37.474 kb on - strand at 37.545 kb on + strand at 37.665 kb on + strand at 37.665 kb on + strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.846 kb on + strand, within H281DRAFT_03010 at 38.334 kb on + strand, within H281DRAFT_03010 at 38.413 kb on - strand at 38.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 34,426 + H281DRAFT_03008 0.31 -0.4 34,427 - H281DRAFT_03008 0.32 +1.0 34,828 + H281DRAFT_03008 0.64 -2.2 34,950 + H281DRAFT_03008 0.73 -0.2 35,279 - +0.8 35,288 - -1.9 35,299 - +0.1 35,388 + +0.1 35,909 + H281DRAFT_03009 0.24 +0.5 36,137 - H281DRAFT_03009 0.34 +1.0 36,984 + H281DRAFT_03009 0.73 +0.6 37,474 - +0.5 37,545 + +0.2 37,665 + +0.0 37,665 + -0.2 37,726 + +0.6 37,726 + -1.7 37,846 + H281DRAFT_03010 0.23 +0.1 38,334 + H281DRAFT_03010 0.82 -0.1 38,413 - -1.9 38,413 - -0.8
Or see this region's nucleotide sequence