Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02596

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02594 and H281DRAFT_02595 are separated by 159 nucleotidesH281DRAFT_02595 and H281DRAFT_02596 are separated by 107 nucleotidesH281DRAFT_02596 and H281DRAFT_02597 are separated by 267 nucleotides H281DRAFT_02594: H281DRAFT_02594 - 3-carboxy-cis,cis-muconate cycloisomerase, at 167,686 to 169,056 _02594 H281DRAFT_02595: H281DRAFT_02595 - transcriptional regulator, GntR family, at 169,216 to 169,947 _02595 H281DRAFT_02596: H281DRAFT_02596 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 170,055 to 171,596 _02596 H281DRAFT_02597: H281DRAFT_02597 - Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family, at 171,864 to 172,655 _02597 Position (kb) 170 171 172Strain fitness (log2 ratio) -2 -1 0 1 2at 169.160 kb on + strandat 169.166 kb on + strandat 169.167 kb on - strandat 169.232 kb on - strandat 169.295 kb on - strand, within H281DRAFT_02595at 169.295 kb on - strand, within H281DRAFT_02595at 169.649 kb on - strand, within H281DRAFT_02595at 169.663 kb on + strand, within H281DRAFT_02595at 169.850 kb on - strand, within H281DRAFT_02595at 169.850 kb on - strand, within H281DRAFT_02595at 170.013 kb on + strandat 170.050 kb on + strandat 170.050 kb on + strandat 170.050 kb on + strandat 170.051 kb on - strandat 170.051 kb on - strandat 170.051 kb on - strandat 170.294 kb on - strand, within H281DRAFT_02596at 170.559 kb on + strand, within H281DRAFT_02596at 170.560 kb on - strand, within H281DRAFT_02596at 170.633 kb on - strand, within H281DRAFT_02596at 170.665 kb on + strand, within H281DRAFT_02596at 170.665 kb on + strand, within H281DRAFT_02596at 170.666 kb on - strand, within H281DRAFT_02596at 171.418 kb on + strand, within H281DRAFT_02596at 171.594 kb on + strandat 171.595 kb on - strandat 171.811 kb on + strandat 171.865 kb on + strandat 171.866 kb on - strandat 172.106 kb on + strand, within H281DRAFT_02597at 172.106 kb on + strand, within H281DRAFT_02597at 172.179 kb on + strand, within H281DRAFT_02597at 172.180 kb on - strand, within H281DRAFT_02597at 172.228 kb on + strand, within H281DRAFT_02597at 172.381 kb on + strand, within H281DRAFT_02597at 172.501 kb on + strand, within H281DRAFT_02597at 172.513 kb on - strand, within H281DRAFT_02597at 172.516 kb on + strand, within H281DRAFT_02597at 172.516 kb on + strand, within H281DRAFT_02597at 172.516 kb on + strand, within H281DRAFT_02597at 172.516 kb on + strand, within H281DRAFT_02597at 172.517 kb on - strand, within H281DRAFT_02597at 172.517 kb on - strand, within H281DRAFT_02597at 172.517 kb on - strand, within H281DRAFT_02597

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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169,160 + +1.8
169,166 + -0.2
169,167 - -1.0
169,232 - -0.4
169,295 - H281DRAFT_02595 0.11 -0.3
169,295 - H281DRAFT_02595 0.11 +0.2
169,649 - H281DRAFT_02595 0.59 -1.5
169,663 + H281DRAFT_02595 0.61 +1.2
169,850 - H281DRAFT_02595 0.87 -0.8
169,850 - H281DRAFT_02595 0.87 -0.1
170,013 + -1.2
170,050 + +0.4
170,050 + +0.5
170,050 + +1.2
170,051 - -0.5
170,051 - +0.5
170,051 - -1.1
170,294 - H281DRAFT_02596 0.15 -0.1
170,559 + H281DRAFT_02596 0.33 +1.5
170,560 - H281DRAFT_02596 0.33 +1.1
170,633 - H281DRAFT_02596 0.37 +0.6
170,665 + H281DRAFT_02596 0.40 +1.1
170,665 + H281DRAFT_02596 0.40 -0.0
170,666 - H281DRAFT_02596 0.40 +1.0
171,418 + H281DRAFT_02596 0.88 -1.8
171,594 + +0.5
171,595 - -1.9
171,811 + +0.2
171,865 + +1.3
171,866 - +0.1
172,106 + H281DRAFT_02597 0.31 -1.5
172,106 + H281DRAFT_02597 0.31 +0.1
172,179 + H281DRAFT_02597 0.40 +0.3
172,180 - H281DRAFT_02597 0.40 +0.1
172,228 + H281DRAFT_02597 0.46 -0.2
172,381 + H281DRAFT_02597 0.65 -0.2
172,501 + H281DRAFT_02597 0.80 +0.0
172,513 - H281DRAFT_02597 0.82 -0.7
172,516 + H281DRAFT_02597 0.82 +0.5
172,516 + H281DRAFT_02597 0.82 +0.4
172,516 + H281DRAFT_02597 0.82 +0.2
172,516 + H281DRAFT_02597 0.82 +0.4
172,517 - H281DRAFT_02597 0.82 +0.2
172,517 - H281DRAFT_02597 0.82 -0.6
172,517 - H281DRAFT_02597 0.82 +0.5

Or see this region's nucleotide sequence