Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02461

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02459 and H281DRAFT_02460 are separated by 64 nucleotidesH281DRAFT_02460 and H281DRAFT_02461 are separated by 93 nucleotidesH281DRAFT_02461 and H281DRAFT_02462 are separated by 93 nucleotides H281DRAFT_02459: H281DRAFT_02459 - sarcosine oxidase subunit gamma, at 26,432 to 27,088 _02459 H281DRAFT_02460: H281DRAFT_02460 - hypothetical protein, at 27,153 to 27,416 _02460 H281DRAFT_02461: H281DRAFT_02461 - MFS transporter, putative metabolite:H+ symporter, at 27,510 to 29,027 _02461 H281DRAFT_02462: H281DRAFT_02462 - beta-lactamase class C, at 29,121 to 30,302 _02462 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 26.854 kb on + strand, within H281DRAFT_02459at 26.855 kb on - strand, within H281DRAFT_02459at 27.096 kb on - strandat 27.282 kb on + strand, within H281DRAFT_02460at 27.286 kb on + strand, within H281DRAFT_02460at 27.287 kb on - strand, within H281DRAFT_02460at 27.333 kb on + strand, within H281DRAFT_02460at 27.334 kb on - strand, within H281DRAFT_02460at 27.415 kb on - strandat 27.516 kb on + strandat 27.525 kb on + strandat 27.526 kb on - strandat 27.538 kb on + strandat 27.539 kb on - strandat 27.551 kb on - strandat 27.925 kb on - strand, within H281DRAFT_02461at 27.925 kb on - strand, within H281DRAFT_02461at 27.967 kb on - strand, within H281DRAFT_02461at 28.120 kb on - strand, within H281DRAFT_02461at 28.120 kb on - strand, within H281DRAFT_02461at 28.379 kb on - strand, within H281DRAFT_02461at 28.392 kb on + strand, within H281DRAFT_02461at 28.393 kb on - strand, within H281DRAFT_02461at 28.450 kb on - strand, within H281DRAFT_02461at 28.518 kb on + strand, within H281DRAFT_02461at 28.639 kb on - strand, within H281DRAFT_02461at 28.740 kb on + strand, within H281DRAFT_02461at 28.740 kb on + strand, within H281DRAFT_02461at 28.740 kb on + strand, within H281DRAFT_02461at 28.741 kb on - strand, within H281DRAFT_02461at 28.746 kb on + strand, within H281DRAFT_02461at 28.747 kb on - strand, within H281DRAFT_02461at 28.836 kb on + strand, within H281DRAFT_02461at 28.837 kb on - strand, within H281DRAFT_02461at 28.837 kb on - strand, within H281DRAFT_02461at 28.930 kb on + strandat 29.122 kb on + strandat 29.245 kb on + strand, within H281DRAFT_02462at 29.399 kb on - strand, within H281DRAFT_02462at 29.555 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.610 kb on - strand, within H281DRAFT_02462at 29.654 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.656 kb on + strand, within H281DRAFT_02462at 29.657 kb on - strand, within H281DRAFT_02462at 29.771 kb on - strand, within H281DRAFT_02462at 29.795 kb on - strand, within H281DRAFT_02462at 29.818 kb on + strand, within H281DRAFT_02462at 29.944 kb on + strand, within H281DRAFT_02462at 29.945 kb on - strand, within H281DRAFT_02462at 29.945 kb on - strand, within H281DRAFT_02462

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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26,854 + H281DRAFT_02459 0.64 -1.6
26,855 - H281DRAFT_02459 0.64 -0.4
27,096 - -0.4
27,282 + H281DRAFT_02460 0.49 -0.6
27,286 + H281DRAFT_02460 0.50 -0.2
27,287 - H281DRAFT_02460 0.51 +0.2
27,333 + H281DRAFT_02460 0.68 +0.5
27,334 - H281DRAFT_02460 0.69 +0.6
27,415 - +1.4
27,516 + -0.8
27,525 + -0.1
27,526 - -1.1
27,538 + -0.2
27,539 - -0.6
27,551 - -0.6
27,925 - H281DRAFT_02461 0.27 +0.4
27,925 - H281DRAFT_02461 0.27 +0.5
27,967 - H281DRAFT_02461 0.30 -0.1
28,120 - H281DRAFT_02461 0.40 -2.0
28,120 - H281DRAFT_02461 0.40 -0.4
28,379 - H281DRAFT_02461 0.57 +1.2
28,392 + H281DRAFT_02461 0.58 +0.2
28,393 - H281DRAFT_02461 0.58 +1.0
28,450 - H281DRAFT_02461 0.62 -0.3
28,518 + H281DRAFT_02461 0.66 -1.4
28,639 - H281DRAFT_02461 0.74 -0.2
28,740 + H281DRAFT_02461 0.81 -0.2
28,740 + H281DRAFT_02461 0.81 +0.8
28,740 + H281DRAFT_02461 0.81 +0.3
28,741 - H281DRAFT_02461 0.81 +0.4
28,746 + H281DRAFT_02461 0.81 -0.3
28,747 - H281DRAFT_02461 0.81 +0.3
28,836 + H281DRAFT_02461 0.87 +0.3
28,837 - H281DRAFT_02461 0.87 -0.4
28,837 - H281DRAFT_02461 0.87 -0.3
28,930 + +0.7
29,122 + +1.4
29,245 + H281DRAFT_02462 0.10 +0.4
29,399 - H281DRAFT_02462 0.24 +0.3
29,555 - H281DRAFT_02462 0.37 +0.5
29,610 - H281DRAFT_02462 0.41 +1.1
29,610 - H281DRAFT_02462 0.41 -0.8
29,610 - H281DRAFT_02462 0.41 +0.6
29,654 + H281DRAFT_02462 0.45 -0.3
29,656 + H281DRAFT_02462 0.45 -0.6
29,656 + H281DRAFT_02462 0.45 -0.4
29,656 + H281DRAFT_02462 0.45 +0.7
29,656 + H281DRAFT_02462 0.45 -1.1
29,656 + H281DRAFT_02462 0.45 -0.5
29,657 - H281DRAFT_02462 0.45 -0.8
29,771 - H281DRAFT_02462 0.55 -0.7
29,795 - H281DRAFT_02462 0.57 +0.6
29,818 + H281DRAFT_02462 0.59 +0.3
29,944 + H281DRAFT_02462 0.70 +1.0
29,945 - H281DRAFT_02462 0.70 +0.4
29,945 - H281DRAFT_02462 0.70 +0.3

Or see this region's nucleotide sequence