Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02138

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02137 and H281DRAFT_02138 overlap by 8 nucleotidesH281DRAFT_02138 and H281DRAFT_02139 overlap by 4 nucleotides H281DRAFT_02137: H281DRAFT_02137 - type I restriction enzyme M protein, at 274,554 to 276,065 _02137 H281DRAFT_02138: H281DRAFT_02138 - type I restriction enzyme, S subunit, at 276,058 to 277,431 _02138 H281DRAFT_02139: H281DRAFT_02139 - type I restriction enzyme, R subunit, at 277,428 to 280,721 _02139 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 275.109 kb on + strand, within H281DRAFT_02137at 275.475 kb on + strand, within H281DRAFT_02137at 275.475 kb on + strand, within H281DRAFT_02137at 275.478 kb on - strand, within H281DRAFT_02137at 275.520 kb on + strand, within H281DRAFT_02137at 275.778 kb on + strand, within H281DRAFT_02137at 275.779 kb on - strand, within H281DRAFT_02137at 276.016 kb on + strandat 276.064 kb on - strandat 276.122 kb on + strandat 276.122 kb on + strandat 276.122 kb on + strandat 276.123 kb on - strandat 276.162 kb on - strandat 276.258 kb on + strand, within H281DRAFT_02138at 276.258 kb on + strand, within H281DRAFT_02138at 276.258 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strand, within H281DRAFT_02138at 276.407 kb on + strandat 276.407 kb on + strandat 276.407 kb on + strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.408 kb on - strand, within H281DRAFT_02138at 276.458 kb on + strand, within H281DRAFT_02138at 276.459 kb on - strand, within H281DRAFT_02138at 276.624 kb on + strand, within H281DRAFT_02138at 276.624 kb on + strand, within H281DRAFT_02138at 276.625 kb on - strand, within H281DRAFT_02138at 276.625 kb on - strand, within H281DRAFT_02138at 276.643 kb on + strand, within H281DRAFT_02138at 276.643 kb on + strand, within H281DRAFT_02138at 276.644 kb on - strand, within H281DRAFT_02138at 276.834 kb on - strand, within H281DRAFT_02138at 276.834 kb on - strand, within H281DRAFT_02138at 276.858 kb on + strand, within H281DRAFT_02138at 276.859 kb on - strand, within H281DRAFT_02138at 276.859 kb on - strand, within H281DRAFT_02138at 276.905 kb on + strand, within H281DRAFT_02138at 276.906 kb on - strand, within H281DRAFT_02138at 276.922 kb on + strand, within H281DRAFT_02138at 276.923 kb on - strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.961 kb on + strand, within H281DRAFT_02138at 276.967 kb on + strand, within H281DRAFT_02138at 276.967 kb on + strand, within H281DRAFT_02138at 276.991 kb on + strand, within H281DRAFT_02138at 276.992 kb on - strand, within H281DRAFT_02138at 277.040 kb on + strand, within H281DRAFT_02138at 277.040 kb on + strand, within H281DRAFT_02138at 277.041 kb on - strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.043 kb on + strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.044 kb on - strand, within H281DRAFT_02138at 277.048 kb on + strand, within H281DRAFT_02138at 277.048 kb on + strand, within H281DRAFT_02138at 277.075 kb on + strand, within H281DRAFT_02138at 277.075 kb on + strand, within H281DRAFT_02138at 277.075 kb on + strand, within H281DRAFT_02138at 277.076 kb on - strand, within H281DRAFT_02138at 277.076 kb on - strand, within H281DRAFT_02138at 277.132 kb on + strand, within H281DRAFT_02138at 277.458 kb on + strandat 277.459 kb on - strandat 277.480 kb on + strandat 277.608 kb on + strandat 277.608 kb on + strandat 277.609 kb on - strandat 277.716 kb on + strandat 277.740 kb on - strandat 277.740 kb on - strandat 277.740 kb on - strandat 277.740 kb on - strandat 277.793 kb on - strand, within H281DRAFT_02139at 277.896 kb on + strand, within H281DRAFT_02139at 277.896 kb on + strand, within H281DRAFT_02139at 277.897 kb on - strand, within H281DRAFT_02139at 278.227 kb on - strand, within H281DRAFT_02139at 278.305 kb on + strand, within H281DRAFT_02139at 278.306 kb on - strand, within H281DRAFT_02139at 278.306 kb on - strand, within H281DRAFT_02139at 278.374 kb on + strand, within H281DRAFT_02139

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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275,109 + H281DRAFT_02137 0.37 -2.5
275,475 + H281DRAFT_02137 0.61 -0.0
275,475 + H281DRAFT_02137 0.61 -1.6
275,478 - H281DRAFT_02137 0.61 -1.7
275,520 + H281DRAFT_02137 0.64 -3.2
275,778 + H281DRAFT_02137 0.81 +0.0
275,779 - H281DRAFT_02137 0.81 +0.3
276,016 + +0.2
276,064 - -0.2
276,122 + +0.2
276,122 + +0.2
276,122 + -0.3
276,123 - -0.3
276,162 - -0.0
276,258 + H281DRAFT_02138 0.15 +0.5
276,258 + H281DRAFT_02138 0.15 +0.3
276,258 + H281DRAFT_02138 0.15 -0.5
276,407 + H281DRAFT_02138 0.25 -1.5
276,407 + H281DRAFT_02138 0.25 +0.1
276,407 + H281DRAFT_02138 0.25 -1.1
276,407 + H281DRAFT_02138 0.25 +0.4
276,407 + +0.2
276,407 + -0.8
276,407 + H281DRAFT_02138 0.25 +0.2
276,408 - H281DRAFT_02138 0.25 -0.8
276,408 - H281DRAFT_02138 0.25 +0.3
276,408 - H281DRAFT_02138 0.25 +1.0
276,408 - H281DRAFT_02138 0.25 +0.2
276,458 + H281DRAFT_02138 0.29 -0.0
276,459 - H281DRAFT_02138 0.29 +0.0
276,624 + H281DRAFT_02138 0.41 +0.7
276,624 + H281DRAFT_02138 0.41 +0.2
276,625 - H281DRAFT_02138 0.41 +1.1
276,625 - H281DRAFT_02138 0.41 -0.4
276,643 + H281DRAFT_02138 0.43 +0.9
276,643 + H281DRAFT_02138 0.43 -0.2
276,644 - H281DRAFT_02138 0.43 +0.9
276,834 - H281DRAFT_02138 0.56 -0.9
276,834 - H281DRAFT_02138 0.56 +0.3
276,858 + H281DRAFT_02138 0.58 -0.5
276,859 - H281DRAFT_02138 0.58 -0.9
276,859 - H281DRAFT_02138 0.58 -0.3
276,905 + H281DRAFT_02138 0.62 -0.7
276,906 - H281DRAFT_02138 0.62 +1.3
276,922 + H281DRAFT_02138 0.63 +1.1
276,923 - H281DRAFT_02138 0.63 -1.9
276,961 + H281DRAFT_02138 0.66 +0.1
276,961 + H281DRAFT_02138 0.66 +0.0
276,961 + H281DRAFT_02138 0.66 -0.2
276,961 + H281DRAFT_02138 0.66 -0.9
276,967 + H281DRAFT_02138 0.66 -1.3
276,967 + H281DRAFT_02138 0.66 +0.0
276,991 + H281DRAFT_02138 0.68 -0.2
276,992 - H281DRAFT_02138 0.68 +1.1
277,040 + H281DRAFT_02138 0.71 -0.4
277,040 + H281DRAFT_02138 0.71 +0.4
277,041 - H281DRAFT_02138 0.72 -0.2
277,043 + H281DRAFT_02138 0.72 +0.5
277,043 + H281DRAFT_02138 0.72 -0.4
277,043 + H281DRAFT_02138 0.72 -0.8
277,043 + H281DRAFT_02138 0.72 -0.5
277,043 + H281DRAFT_02138 0.72 +0.3
277,044 - H281DRAFT_02138 0.72 -0.4
277,044 - H281DRAFT_02138 0.72 +0.2
277,044 - H281DRAFT_02138 0.72 +1.1
277,044 - H281DRAFT_02138 0.72 +1.2
277,048 + H281DRAFT_02138 0.72 -0.1
277,048 + H281DRAFT_02138 0.72 +3.5
277,075 + H281DRAFT_02138 0.74 -0.2
277,075 + H281DRAFT_02138 0.74 +0.2
277,075 + H281DRAFT_02138 0.74 -0.8
277,076 - H281DRAFT_02138 0.74 -0.5
277,076 - H281DRAFT_02138 0.74 +0.8
277,132 + H281DRAFT_02138 0.78 -1.4
277,458 + +0.3
277,459 - -1.0
277,480 + -1.9
277,608 + -2.0
277,608 + -0.7
277,609 - -3.0
277,716 + -0.1
277,740 - +0.6
277,740 - -0.7
277,740 - +0.6
277,740 - +0.2
277,793 - H281DRAFT_02139 0.11 -0.1
277,896 + H281DRAFT_02139 0.14 +0.1
277,896 + H281DRAFT_02139 0.14 -1.2
277,897 - H281DRAFT_02139 0.14 -0.3
278,227 - H281DRAFT_02139 0.24 -0.4
278,305 + H281DRAFT_02139 0.27 +1.3
278,306 - H281DRAFT_02139 0.27 -1.1
278,306 - H281DRAFT_02139 0.27 +0.5
278,374 + H281DRAFT_02139 0.29 +0.0

Or see this region's nucleotide sequence