Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01308

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01307 and H281DRAFT_01308 overlap by 4 nucleotidesH281DRAFT_01308 and H281DRAFT_01309 are separated by 24 nucleotides H281DRAFT_01307: H281DRAFT_01307 - Transcriptional regulator of acetoin/glycerol metabolism, at 145,108 to 147,225 _01307 H281DRAFT_01308: H281DRAFT_01308 - flavoprotein, at 147,222 to 147,800 _01308 H281DRAFT_01309: H281DRAFT_01309 - dihydropteroate synthase-related protein, at 147,825 to 149,207 _01309 Position (kb) 147 148Strain fitness (log2 ratio) -1 0 1at 146.266 kb on - strand, within H281DRAFT_01307at 146.761 kb on + strand, within H281DRAFT_01307at 146.762 kb on - strand, within H281DRAFT_01307at 146.762 kb on - strand, within H281DRAFT_01307at 146.762 kb on - strand, within H281DRAFT_01307at 147.217 kb on - strandat 147.486 kb on + strand, within H281DRAFT_01308at 147.486 kb on + strand, within H281DRAFT_01308at 147.487 kb on - strand, within H281DRAFT_01308at 147.670 kb on + strand, within H281DRAFT_01308at 147.724 kb on - strand, within H281DRAFT_01308at 148.090 kb on + strand, within H281DRAFT_01309at 148.090 kb on + strand, within H281DRAFT_01309at 148.323 kb on + strand, within H281DRAFT_01309at 148.571 kb on + strand, within H281DRAFT_01309

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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146,266 - H281DRAFT_01307 0.55 +0.5
146,761 + H281DRAFT_01307 0.78 -0.2
146,762 - H281DRAFT_01307 0.78 +0.1
146,762 - H281DRAFT_01307 0.78 +0.5
146,762 - H281DRAFT_01307 0.78 -0.0
147,217 - +0.1
147,486 + H281DRAFT_01308 0.46 +1.1
147,486 + H281DRAFT_01308 0.46 +1.6
147,487 - H281DRAFT_01308 0.46 +1.5
147,670 + H281DRAFT_01308 0.77 +0.3
147,724 - H281DRAFT_01308 0.87 -0.6
148,090 + H281DRAFT_01309 0.19 +0.4
148,090 + H281DRAFT_01309 0.19 +0.1
148,323 + H281DRAFT_01309 0.36 +0.5
148,571 + H281DRAFT_01309 0.54 +0.3

Or see this region's nucleotide sequence