Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01302

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01301 and H281DRAFT_01302 overlap by 4 nucleotidesH281DRAFT_01302 and H281DRAFT_01303 are separated by 108 nucleotides H281DRAFT_01301: H281DRAFT_01301 - methenyltetrahydromethanopterin cyclohydrolase, at 139,847 to 140,890 _01301 H281DRAFT_01302: H281DRAFT_01302 - SSU ribosomal protein S6P modification protein, at 140,887 to 141,921 _01302 H281DRAFT_01303: H281DRAFT_01303 - triphosphoribosyl-dephospho-CoA synthase, at 142,030 to 142,968 _01303 Position (kb) 140 141 142Strain fitness (log2 ratio) -1 0 1at 140.832 kb on - strandat 141.306 kb on + strandat 141.506 kb on - strand, within H281DRAFT_01302at 142.804 kb on - strand, within H281DRAFT_01303at 142.804 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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140,832 - -1.7
141,306 + -0.0
141,506 - H281DRAFT_01302 0.60 +0.4
142,804 - H281DRAFT_01303 0.82 -0.3
142,804 - -1.4

Or see this region's nucleotide sequence