Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01213

Experiment: Gallic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01211 and H281DRAFT_01212 are separated by 244 nucleotidesH281DRAFT_01212 and H281DRAFT_01213 are separated by 49 nucleotidesH281DRAFT_01213 and H281DRAFT_01214 are separated by 29 nucleotidesH281DRAFT_01214 and H281DRAFT_01215 are separated by 197 nucleotides H281DRAFT_01211: H281DRAFT_01211 - Transcriptional regulator of acetoin/glycerol metabolism, at 50,561 to 52,537 _01211 H281DRAFT_01212: H281DRAFT_01212 - Ferredoxin, at 52,782 to 53,093 _01212 H281DRAFT_01213: H281DRAFT_01213 - Protein of unknown function (DUF1653), at 53,143 to 53,346 _01213 H281DRAFT_01214: H281DRAFT_01214 - Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains, at 53,376 to 54,020 _01214 H281DRAFT_01215: H281DRAFT_01215 - hypothetical protein, at 54,218 to 54,436 _01215 Position (kb) 53 54Strain fitness (log2 ratio) -2 -1 0 1at 52.218 kb on + strand, within H281DRAFT_01211at 52.218 kb on + strand, within H281DRAFT_01211at 52.219 kb on - strand, within H281DRAFT_01211at 52.219 kb on - strand, within H281DRAFT_01211at 52.373 kb on - strandat 52.535 kb on + strandat 52.536 kb on - strandat 52.536 kb on - strandat 52.558 kb on + strandat 52.558 kb on + strandat 52.563 kb on + strandat 52.660 kb on + strandat 52.661 kb on - strandat 52.718 kb on - strandat 52.916 kb on + strand, within H281DRAFT_01212at 52.916 kb on + strand, within H281DRAFT_01212at 52.916 kb on + strand, within H281DRAFT_01212at 52.917 kb on - strand, within H281DRAFT_01212at 52.917 kb on - strand, within H281DRAFT_01212at 52.964 kb on + strand, within H281DRAFT_01212at 52.964 kb on + strand, within H281DRAFT_01212at 52.965 kb on - strand, within H281DRAFT_01212at 53.010 kb on + strand, within H281DRAFT_01212at 53.010 kb on + strand, within H281DRAFT_01212at 53.011 kb on - strand, within H281DRAFT_01212at 53.011 kb on - strandat 53.092 kb on - strandat 53.304 kb on - strand, within H281DRAFT_01213at 53.307 kb on + strand, within H281DRAFT_01213at 53.308 kb on - strand, within H281DRAFT_01213at 53.318 kb on + strand, within H281DRAFT_01213at 53.319 kb on - strand, within H281DRAFT_01213at 53.319 kb on - strand, within H281DRAFT_01213at 53.409 kb on - strandat 53.410 kb on + strandat 53.513 kb on + strand, within H281DRAFT_01214at 53.513 kb on + strand, within H281DRAFT_01214at 53.514 kb on - strand, within H281DRAFT_01214at 53.514 kb on - strand, within H281DRAFT_01214at 53.514 kb on - strand, within H281DRAFT_01214at 53.572 kb on + strand, within H281DRAFT_01214at 53.690 kb on + strand, within H281DRAFT_01214at 53.821 kb on + strand, within H281DRAFT_01214at 53.821 kb on + strand, within H281DRAFT_01214at 53.853 kb on + strand, within H281DRAFT_01214at 53.854 kb on - strand, within H281DRAFT_01214at 54.118 kb on - strandat 54.189 kb on - strandat 54.200 kb on + strandat 54.200 kb on + strandat 54.200 kb on + strandat 54.317 kb on - strand, within H281DRAFT_01215at 54.335 kb on - strand, within H281DRAFT_01215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
remove
52,218 + H281DRAFT_01211 0.84 +0.3
52,218 + H281DRAFT_01211 0.84 +1.2
52,219 - H281DRAFT_01211 0.84 +0.8
52,219 - H281DRAFT_01211 0.84 -0.1
52,373 - +0.2
52,535 + +0.6
52,536 - +0.1
52,536 - -0.0
52,558 + -0.5
52,558 + -0.2
52,563 + +0.5
52,660 + -1.0
52,661 - +0.0
52,718 - +1.0
52,916 + H281DRAFT_01212 0.43 +0.5
52,916 + H281DRAFT_01212 0.43 +0.3
52,916 + H281DRAFT_01212 0.43 +0.2
52,917 - H281DRAFT_01212 0.43 +0.3
52,917 - H281DRAFT_01212 0.43 +0.4
52,964 + H281DRAFT_01212 0.58 +0.2
52,964 + H281DRAFT_01212 0.58 +0.2
52,965 - H281DRAFT_01212 0.59 +0.1
53,010 + H281DRAFT_01212 0.73 +0.1
53,010 + H281DRAFT_01212 0.73 -0.1
53,011 - H281DRAFT_01212 0.73 +0.9
53,011 - +0.6
53,092 - -0.2
53,304 - H281DRAFT_01213 0.79 -0.9
53,307 + H281DRAFT_01213 0.80 +1.0
53,308 - H281DRAFT_01213 0.81 +0.8
53,318 + H281DRAFT_01213 0.86 +0.0
53,319 - H281DRAFT_01213 0.86 -1.1
53,319 - H281DRAFT_01213 0.86 -0.1
53,409 - +0.5
53,410 + +0.4
53,513 + H281DRAFT_01214 0.21 -1.9
53,513 + H281DRAFT_01214 0.21 +0.7
53,514 - H281DRAFT_01214 0.21 +0.3
53,514 - H281DRAFT_01214 0.21 +1.1
53,514 - H281DRAFT_01214 0.21 +0.5
53,572 + H281DRAFT_01214 0.30 -0.0
53,690 + H281DRAFT_01214 0.49 +0.6
53,821 + H281DRAFT_01214 0.69 +1.2
53,821 + H281DRAFT_01214 0.69 -0.3
53,853 + H281DRAFT_01214 0.74 +0.1
53,854 - H281DRAFT_01214 0.74 +0.4
54,118 - +0.7
54,189 - +0.5
54,200 + -2.1
54,200 + -0.2
54,200 + -0.5
54,317 - H281DRAFT_01215 0.45 +0.2
54,335 - H281DRAFT_01215 0.53 +0.1

Or see this region's nucleotide sequence