Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01122

Experiment: Gallic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01121 and H281DRAFT_01122 are separated by 120 nucleotidesH281DRAFT_01122 and H281DRAFT_01123 are separated by 136 nucleotides H281DRAFT_01121: H281DRAFT_01121 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 1,263,745 to 1,264,920 _01121 H281DRAFT_01122: H281DRAFT_01122 - hypothetical protein, at 1,265,041 to 1,265,700 _01122 H281DRAFT_01123: H281DRAFT_01123 - transcriptional regulator, LysR family, at 1,265,837 to 1,266,736 _01123 Position (kb) 1265 1266Strain fitness (log2 ratio) -2 -1 0 1at 1264.225 kb on + strand, within H281DRAFT_01121at 1264.226 kb on - strand, within H281DRAFT_01121at 1264.304 kb on - strand, within H281DRAFT_01121at 1264.417 kb on + strand, within H281DRAFT_01121at 1265.132 kb on + strand, within H281DRAFT_01122at 1265.693 kb on - strandat 1265.800 kb on + strandat 1266.251 kb on + strand, within H281DRAFT_01123at 1266.251 kb on + strand, within H281DRAFT_01123at 1266.252 kb on - strand, within H281DRAFT_01123at 1266.252 kb on - strand, within H281DRAFT_01123at 1266.252 kb on - strand, within H281DRAFT_01123at 1266.252 kb on - strand, within H281DRAFT_01123at 1266.252 kb on - strand, within H281DRAFT_01123

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
remove
1,264,225 + H281DRAFT_01121 0.41 +0.6
1,264,226 - H281DRAFT_01121 0.41 -2.3
1,264,304 - H281DRAFT_01121 0.48 +0.3
1,264,417 + H281DRAFT_01121 0.57 +1.2
1,265,132 + H281DRAFT_01122 0.14 +0.6
1,265,693 - +1.4
1,265,800 + +0.1
1,266,251 + H281DRAFT_01123 0.46 +0.7
1,266,251 + H281DRAFT_01123 0.46 -0.2
1,266,252 - H281DRAFT_01123 0.46 +0.1
1,266,252 - H281DRAFT_01123 0.46 +0.7
1,266,252 - H281DRAFT_01123 0.46 -2.0
1,266,252 - H281DRAFT_01123 0.46 +0.3
1,266,252 - H281DRAFT_01123 0.46 -0.4

Or see this region's nucleotide sequence