Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00990 and H281DRAFT_00991 are separated by 37 nucleotides H281DRAFT_00991 and H281DRAFT_00992 are separated by 5 nucleotides H281DRAFT_00992 and H281DRAFT_00993 are separated by 17 nucleotides
H281DRAFT_00990: H281DRAFT_00990 - serine hydroxymethyltransferase (EC 2.1.2.1), at 1,111,279 to 1,112,574
_00990
H281DRAFT_00991: H281DRAFT_00991 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,112,612 to 1,113,499
_00991
H281DRAFT_00992: H281DRAFT_00992 - Glycine/D-amino acid oxidase (deaminating), at 1,113,505 to 1,114,836
_00992
H281DRAFT_00993: H281DRAFT_00993 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 1,114,854 to 1,116,347
_00993
Position (kb)
1113
1114
1115 Strain fitness (log2 ratio)
-2
-1
0
1 at 1112.753 kb on + strand, within H281DRAFT_00991 at 1112.753 kb on + strand, within H281DRAFT_00991 at 1112.931 kb on - strand, within H281DRAFT_00991 at 1113.978 kb on + strand, within H281DRAFT_00992 at 1114.026 kb on - strand, within H281DRAFT_00992 at 1114.026 kb on - strand, within H281DRAFT_00992 at 1114.042 kb on + strand, within H281DRAFT_00992 at 1114.848 kb on + strand at 1114.864 kb on - strand at 1115.096 kb on + strand, within H281DRAFT_00993 at 1115.483 kb on - strand, within H281DRAFT_00993 at 1115.813 kb on - strand, within H281DRAFT_00993
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 1,112,753 + H281DRAFT_00991 0.16 +0.2 1,112,753 + H281DRAFT_00991 0.16 +0.3 1,112,931 - H281DRAFT_00991 0.36 -0.5 1,113,978 + H281DRAFT_00992 0.36 +0.1 1,114,026 - H281DRAFT_00992 0.39 +1.1 1,114,026 - H281DRAFT_00992 0.39 -2.0 1,114,042 + H281DRAFT_00992 0.40 +1.1 1,114,848 + +0.9 1,114,864 - +0.4 1,115,096 + H281DRAFT_00993 0.16 +0.5 1,115,483 - H281DRAFT_00993 0.42 +0.5 1,115,813 - H281DRAFT_00993 0.64 -0.0
Or see this region's nucleotide sequence