Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00978

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00976 and H281DRAFT_00977 are separated by 232 nucleotidesH281DRAFT_00977 and H281DRAFT_00978 are separated by 366 nucleotidesH281DRAFT_00978 and H281DRAFT_00979 are separated by 129 nucleotides H281DRAFT_00976: H281DRAFT_00976 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 1,094,891 to 1,095,826 _00976 H281DRAFT_00977: H281DRAFT_00977 - hypothetical protein, at 1,096,059 to 1,096,424 _00977 H281DRAFT_00978: H281DRAFT_00978 - glutathione S-transferase, at 1,096,791 to 1,097,267 _00978 H281DRAFT_00979: H281DRAFT_00979 - enoyl-[acyl-carrier protein] reductase / trans-2-enoyl-CoA reductase (NAD+), at 1,097,397 to 1,098,593 _00979 Position (kb) 1096 1097 1098Strain fitness (log2 ratio) -2 -1 0 1 2at 1095.876 kb on + strandat 1095.877 kb on - strandat 1095.890 kb on + strandat 1096.342 kb on + strand, within H281DRAFT_00977at 1096.343 kb on - strand, within H281DRAFT_00977at 1096.487 kb on + strandat 1096.491 kb on - strandat 1096.602 kb on + strandat 1096.603 kb on - strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.636 kb on + strandat 1096.637 kb on - strandat 1096.822 kb on + strandat 1096.971 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.205 kb on + strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.206 kb on - strand, within H281DRAFT_00978at 1097.207 kb on + strand, within H281DRAFT_00978at 1097.208 kb on - strand, within H281DRAFT_00978at 1097.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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1,095,876 + -1.9
1,095,877 - +0.4
1,095,890 + +0.5
1,096,342 + H281DRAFT_00977 0.77 +0.9
1,096,343 - H281DRAFT_00977 0.78 +0.9
1,096,487 + +0.7
1,096,491 - +0.6
1,096,602 + -0.2
1,096,603 - +0.2
1,096,636 + +0.1
1,096,636 + +2.0
1,096,636 + +0.1
1,096,636 + +1.2
1,096,636 + +0.4
1,096,636 + +0.4
1,096,637 - +1.2
1,096,822 + -0.7
1,096,971 + H281DRAFT_00978 0.38 +0.3
1,097,205 + H281DRAFT_00978 0.87 -0.4
1,097,205 + H281DRAFT_00978 0.87 +0.7
1,097,205 + H281DRAFT_00978 0.87 +0.9
1,097,205 + H281DRAFT_00978 0.87 +1.8
1,097,206 - H281DRAFT_00978 0.87 -0.1
1,097,206 - H281DRAFT_00978 0.87 +0.0
1,097,206 - H281DRAFT_00978 0.87 -0.4
1,097,206 - H281DRAFT_00978 0.87 +0.6
1,097,207 + H281DRAFT_00978 0.87 -0.7
1,097,208 - H281DRAFT_00978 0.87 +0.9
1,097,245 - -1.6

Or see this region's nucleotide sequence