Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00917 and H281DRAFT_00918 are separated by 24 nucleotides H281DRAFT_00918 and H281DRAFT_00919 are separated by 139 nucleotides H281DRAFT_00919 and H281DRAFT_00920 are separated by 214 nucleotides
H281DRAFT_00917: H281DRAFT_00917 - acetyl-CoA C-acetyltransferase, at 1,021,028 to 1,022,206
_00917
H281DRAFT_00918: H281DRAFT_00918 - Conserved secreted protein, at 1,022,231 to 1,022,746
_00918
H281DRAFT_00919: H281DRAFT_00919 - hypothetical protein, at 1,022,886 to 1,023,242
_00919
H281DRAFT_00920: H281DRAFT_00920 - transcriptional regulator, GntR family, at 1,023,457 to 1,024,980
_00920
Position (kb)
1022
1023
1024 Strain fitness (log2 ratio)
-2
-1
0
1 at 1022.162 kb on - strand at 1022.162 kb on - strand at 1022.332 kb on - strand, within H281DRAFT_00918 at 1022.674 kb on + strand at 1022.675 kb on - strand, within H281DRAFT_00918 at 1022.784 kb on + strand at 1022.785 kb on - strand at 1022.858 kb on + strand at 1022.859 kb on - strand at 1022.865 kb on - strand at 1022.887 kb on + strand at 1022.888 kb on - strand at 1022.888 kb on - strand at 1023.021 kb on - strand, within H281DRAFT_00919 at 1023.280 kb on + strand at 1023.313 kb on + strand at 1023.357 kb on + strand at 1023.383 kb on - strand at 1023.437 kb on - strand at 1023.437 kb on - strand at 1023.560 kb on - strand at 1023.841 kb on + strand, within H281DRAFT_00920 at 1023.841 kb on + strand, within H281DRAFT_00920 at 1023.841 kb on + strand, within H281DRAFT_00920 at 1023.842 kb on - strand, within H281DRAFT_00920
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 1,022,162 - +0.6 1,022,162 - -0.7 1,022,332 - H281DRAFT_00918 0.20 -1.8 1,022,674 + -1.4 1,022,675 - H281DRAFT_00918 0.86 -0.5 1,022,784 + -1.4 1,022,785 - +0.1 1,022,858 + -0.3 1,022,859 - +0.6 1,022,865 - +0.2 1,022,887 + +0.6 1,022,888 - +1.1 1,022,888 - +0.9 1,023,021 - H281DRAFT_00919 0.38 +0.6 1,023,280 + -1.3 1,023,313 + +0.4 1,023,357 + +0.3 1,023,383 - +0.8 1,023,437 - +0.5 1,023,437 - +0.2 1,023,560 - +0.4 1,023,841 + H281DRAFT_00920 0.25 +0.3 1,023,841 + H281DRAFT_00920 0.25 +0.0 1,023,841 + H281DRAFT_00920 0.25 +0.1 1,023,842 - H281DRAFT_00920 0.25 +0.6
Or see this region's nucleotide sequence