Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00428 and H281DRAFT_00429 are separated by 42 nucleotides H281DRAFT_00429 and H281DRAFT_00430 are separated by 79 nucleotides H281DRAFT_00430 and H281DRAFT_00431 are separated by 50 nucleotides
H281DRAFT_00428: H281DRAFT_00428 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 468,833 to 469,774
_00428
H281DRAFT_00429: H281DRAFT_00429 - L-fuconate dehydratase, at 469,817 to 471,115
_00429
H281DRAFT_00430: H281DRAFT_00430 - hypothetical protein, at 471,195 to 471,698
_00430
H281DRAFT_00431: H281DRAFT_00431 - oxidoreductase alpha (molybdopterin) subunit, at 471,749 to 474,097
_00431
Position (kb) 469
470
471
472 Strain fitness (log2 ratio) -1
0
1 at 468.828 kb on - strand at 468.918 kb on - strand at 469.056 kb on + strand, within H281DRAFT_00428 at 469.056 kb on + strand, within H281DRAFT_00428 at 469.192 kb on - strand, within H281DRAFT_00428 at 469.469 kb on - strand, within H281DRAFT_00428 at 469.546 kb on - strand, within H281DRAFT_00428 at 469.546 kb on - strand, within H281DRAFT_00428 at 469.546 kb on - strand, within H281DRAFT_00428 at 469.643 kb on - strand, within H281DRAFT_00428 at 469.775 kb on + strand at 469.922 kb on + strand at 469.923 kb on - strand at 469.957 kb on + strand, within H281DRAFT_00429 at 470.045 kb on - strand, within H281DRAFT_00429 at 470.270 kb on + strand, within H281DRAFT_00429 at 470.270 kb on + strand, within H281DRAFT_00429 at 470.378 kb on + strand, within H281DRAFT_00429 at 470.406 kb on - strand, within H281DRAFT_00429 at 470.905 kb on + strand, within H281DRAFT_00429 at 470.963 kb on + strand, within H281DRAFT_00429 at 470.964 kb on - strand, within H281DRAFT_00429 at 471.023 kb on - strand at 471.337 kb on - strand, within H281DRAFT_00430 at 471.337 kb on - strand, within H281DRAFT_00430 at 471.402 kb on + strand, within H281DRAFT_00430 at 471.403 kb on - strand, within H281DRAFT_00430 at 471.421 kb on + strand, within H281DRAFT_00430 at 471.447 kb on - strand, within H281DRAFT_00430 at 471.600 kb on + strand, within H281DRAFT_00430 at 471.600 kb on + strand, within H281DRAFT_00430 at 471.601 kb on - strand, within H281DRAFT_00430 at 471.661 kb on - strand at 471.661 kb on - strand at 471.699 kb on + strand at 471.880 kb on - strand at 471.909 kb on + strand at 471.918 kb on - strand at 472.047 kb on + strand, within H281DRAFT_00431 at 472.047 kb on + strand, within H281DRAFT_00431 at 472.049 kb on + strand, within H281DRAFT_00431 at 472.049 kb on + strand, within H281DRAFT_00431 at 472.050 kb on - strand, within H281DRAFT_00431 at 472.092 kb on + strand, within H281DRAFT_00431 at 472.093 kb on - strand, within H281DRAFT_00431
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 468,828 - +0.4 468,918 - +0.2 469,056 + H281DRAFT_00428 0.24 -0.0 469,056 + H281DRAFT_00428 0.24 -0.1 469,192 - H281DRAFT_00428 0.38 -0.5 469,469 - H281DRAFT_00428 0.68 -0.6 469,546 - H281DRAFT_00428 0.76 +0.1 469,546 - H281DRAFT_00428 0.76 -0.0 469,546 - H281DRAFT_00428 0.76 -0.7 469,643 - H281DRAFT_00428 0.86 -0.6 469,775 + -0.5 469,922 + +0.8 469,923 - +0.4 469,957 + H281DRAFT_00429 0.11 +0.7 470,045 - H281DRAFT_00429 0.18 -0.1 470,270 + H281DRAFT_00429 0.35 +0.8 470,270 + H281DRAFT_00429 0.35 +0.5 470,378 + H281DRAFT_00429 0.43 +0.9 470,406 - H281DRAFT_00429 0.45 +1.1 470,905 + H281DRAFT_00429 0.84 +0.1 470,963 + H281DRAFT_00429 0.88 -1.5 470,964 - H281DRAFT_00429 0.88 -0.5 471,023 - -0.8 471,337 - H281DRAFT_00430 0.28 +0.5 471,337 - H281DRAFT_00430 0.28 +0.5 471,402 + H281DRAFT_00430 0.41 +0.0 471,403 - H281DRAFT_00430 0.41 +0.4 471,421 + H281DRAFT_00430 0.45 -1.4 471,447 - H281DRAFT_00430 0.50 +1.2 471,600 + H281DRAFT_00430 0.80 -0.6 471,600 + H281DRAFT_00430 0.80 -1.7 471,601 - H281DRAFT_00430 0.81 -0.2 471,661 - -0.1 471,661 - -1.0 471,699 + -0.6 471,880 - +0.5 471,909 + +0.1 471,918 - +0.2 472,047 + H281DRAFT_00431 0.13 +0.6 472,047 + H281DRAFT_00431 0.13 -0.3 472,049 + H281DRAFT_00431 0.13 +0.2 472,049 + H281DRAFT_00431 0.13 +0.3 472,050 - H281DRAFT_00431 0.13 -0.4 472,092 + H281DRAFT_00431 0.15 +0.2 472,093 - H281DRAFT_00431 0.15 -1.2
Or see this region's nucleotide sequence