Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00369 and H281DRAFT_00370 are separated by 113 nucleotides H281DRAFT_00370 and H281DRAFT_00371 are separated by 8 nucleotides H281DRAFT_00371 and H281DRAFT_00372 are separated by 180 nucleotides
H281DRAFT_00369: H281DRAFT_00369 - benzoate-CoA ligase (EC 6.2.1.25), at 404,431 to 406,035
_00369
H281DRAFT_00370: H281DRAFT_00370 - 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase (EC 1.2.1.77), at 406,149 to 407,744
_00370
H281DRAFT_00371: H281DRAFT_00371 - protein of unknown function (DUF4863), at 407,753 to 408,220
_00371
H281DRAFT_00372: H281DRAFT_00372 - transcriptional regulator, XRE family with shikimate kinase activity, at 408,401 to 409,420
_00372
Position (kb) 406
407
408 Strain fitness (log2 ratio) -1
0
1
2 at 405.312 kb on - strand, within H281DRAFT_00369 at 405.456 kb on - strand, within H281DRAFT_00369 at 405.696 kb on - strand, within H281DRAFT_00369 at 405.696 kb on - strand, within H281DRAFT_00369 at 405.752 kb on + strand, within H281DRAFT_00369 at 405.885 kb on - strand at 406.036 kb on - strand at 406.072 kb on - strand at 406.107 kb on - strand at 406.507 kb on - strand, within H281DRAFT_00370 at 406.514 kb on - strand, within H281DRAFT_00370 at 406.715 kb on - strand, within H281DRAFT_00370 at 406.999 kb on - strand, within H281DRAFT_00370 at 407.494 kb on + strand, within H281DRAFT_00370 at 407.494 kb on + strand, within H281DRAFT_00370 at 407.793 kb on + strand at 408.312 kb on + strand at 408.312 kb on + strand at 408.313 kb on - strand at 408.313 kb on - strand at 408.367 kb on - strand at 408.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 405,312 - H281DRAFT_00369 0.55 +0.0 405,456 - H281DRAFT_00369 0.64 +0.1 405,696 - H281DRAFT_00369 0.79 +0.2 405,696 - H281DRAFT_00369 0.79 -0.6 405,752 + H281DRAFT_00369 0.82 +0.0 405,885 - +0.4 406,036 - -0.2 406,072 - +0.7 406,107 - -0.3 406,507 - H281DRAFT_00370 0.22 -0.2 406,514 - H281DRAFT_00370 0.23 +0.2 406,715 - H281DRAFT_00370 0.35 -0.1 406,999 - H281DRAFT_00370 0.53 +2.3 407,494 + H281DRAFT_00370 0.84 +0.9 407,494 + H281DRAFT_00370 0.84 +1.1 407,793 + +0.4 408,312 + -0.2 408,312 + +0.5 408,313 - +0.4 408,313 - -0.1 408,367 - -0.2 408,442 + -0.3
Or see this region's nucleotide sequence