Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00070

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00069 and H281DRAFT_00070 are separated by 177 nucleotidesH281DRAFT_00070 and H281DRAFT_00071 are separated by 794 nucleotides H281DRAFT_00069: H281DRAFT_00069 - hypothetical protein, at 69,356 to 70,066 _00069 H281DRAFT_00070: H281DRAFT_00070 - hypothetical protein, at 70,244 to 71,071 _00070 H281DRAFT_00071: H281DRAFT_00071 - Integrase, at 71,866 to 72,945 _00071 Position (kb) 70 71 72Strain fitness (log2 ratio) -1 0 1at 69.250 kb on + strandat 69.251 kb on - strandat 69.266 kb on + strandat 69.489 kb on - strand, within H281DRAFT_00069at 70.128 kb on - strandat 70.248 kb on + strandat 70.260 kb on - strandat 70.894 kb on - strand, within H281DRAFT_00070at 71.163 kb on + strandat 71.252 kb on - strandat 71.332 kb on + strandat 71.332 kb on + strandat 71.342 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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69,250 + +0.4
69,251 - +0.4
69,266 + -0.2
69,489 - H281DRAFT_00069 0.19 +1.5
70,128 - +0.2
70,248 + +0.3
70,260 - +0.9
70,894 - H281DRAFT_00070 0.79 -1.6
71,163 + -1.0
71,252 - -1.2
71,332 + +0.2
71,332 + -0.7
71,342 - -0.5

Or see this region's nucleotide sequence