Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04630

Experiment: m.b. Thallium(I) acetate 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04610 and PGA1_c04620 are separated by 187 nucleotidesPGA1_c04620 and PGA1_c04630 are separated by 83 nucleotidesPGA1_c04630 and PGA1_c04640 are separated by 54 nucleotidesPGA1_c04640 and PGA1_c04650 are separated by 6 nucleotides PGA1_c04610: PGA1_c04610 - haloacid dehalogenase, type II, at 454,421 to 455,107 _c04610 PGA1_c04620: PGA1_c04620 - peptidyl-prolyl cis-trans isomerase, FKBP-type, at 455,295 to 455,723 _c04620 PGA1_c04630: PGA1_c04630 - 2-nitropropane dioxygenase, at 455,807 to 456,901 _c04630 PGA1_c04640: PGA1_c04640 - enoyl-[acyl-carrier-protein] reductase FabI, at 456,956 to 457,747 _c04640 PGA1_c04650: PGA1_c04650 - 3-oxoacyl-[acyl-carrier-protein] synthase FabB, at 457,754 to 458,983 _c04650 Position (kb) 455 456 457Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 454.808 kb on + strand, within PGA1_c04610at 454.808 kb on + strand, within PGA1_c04610at 454.808 kb on + strand, within PGA1_c04610at 454.808 kb on + strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.816 kb on - strand, within PGA1_c04610at 454.857 kb on - strand, within PGA1_c04610at 454.887 kb on - strand, within PGA1_c04610at 454.897 kb on - strand, within PGA1_c04610at 454.897 kb on - strand, within PGA1_c04610at 454.929 kb on + strand, within PGA1_c04610at 454.934 kb on + strand, within PGA1_c04610at 454.942 kb on + strand, within PGA1_c04610at 454.963 kb on - strand, within PGA1_c04610at 454.982 kb on - strand, within PGA1_c04610at 454.988 kb on - strand, within PGA1_c04610at 455.011 kb on + strand, within PGA1_c04610at 455.087 kb on + strandat 455.112 kb on - strandat 455.135 kb on - strandat 455.144 kb on - strandat 455.207 kb on + strandat 455.215 kb on - strandat 455.215 kb on - strandat 455.215 kb on - strandat 455.246 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.247 kb on + strandat 455.255 kb on - strandat 455.255 kb on - strandat 455.255 kb on - strandat 455.255 kb on - strandat 455.255 kb on - strandat 455.255 kb on - strandat 455.255 kb on - strandat 455.255 kb on - strandat 455.257 kb on - strandat 455.257 kb on - strandat 455.283 kb on + strandat 455.300 kb on - strandat 455.338 kb on - strand, within PGA1_c04620at 455.369 kb on - strand, within PGA1_c04620at 455.371 kb on + strand, within PGA1_c04620at 455.379 kb on - strand, within PGA1_c04620at 455.379 kb on - strand, within PGA1_c04620at 455.379 kb on - strand, within PGA1_c04620at 455.498 kb on - strand, within PGA1_c04620at 455.498 kb on - strand, within PGA1_c04620at 455.523 kb on + strand, within PGA1_c04620at 455.641 kb on + strand, within PGA1_c04620at 455.653 kb on + strand, within PGA1_c04620at 455.655 kb on - strand, within PGA1_c04620at 455.661 kb on - strand, within PGA1_c04620at 455.661 kb on - strand, within PGA1_c04620at 455.722 kb on - strandat 455.727 kb on - strandat 455.735 kb on - strandat 455.741 kb on - strandat 455.745 kb on - strandat 455.750 kb on - strandat 455.792 kb on + strandat 455.849 kb on + strandat 455.857 kb on - strandat 455.857 kb on - strandat 455.857 kb on - strandat 455.939 kb on - strand, within PGA1_c04630at 455.961 kb on + strand, within PGA1_c04630at 455.961 kb on + strand, within PGA1_c04630at 455.961 kb on + strand, within PGA1_c04630at 455.999 kb on + strand, within PGA1_c04630at 456.016 kb on - strand, within PGA1_c04630at 456.029 kb on - strand, within PGA1_c04630at 456.060 kb on - strand, within PGA1_c04630at 456.078 kb on + strand, within PGA1_c04630at 456.096 kb on - strand, within PGA1_c04630at 456.099 kb on + strand, within PGA1_c04630at 456.107 kb on - strand, within PGA1_c04630at 456.107 kb on - strand, within PGA1_c04630at 456.125 kb on + strand, within PGA1_c04630at 456.125 kb on + strand, within PGA1_c04630at 456.125 kb on + strand, within PGA1_c04630at 456.125 kb on + strand, within PGA1_c04630at 456.125 kb on + strand, within PGA1_c04630at 456.133 kb on - strand, within PGA1_c04630at 456.199 kb on - strand, within PGA1_c04630at 456.218 kb on + strand, within PGA1_c04630at 456.232 kb on - strand, within PGA1_c04630at 456.307 kb on + strand, within PGA1_c04630at 456.307 kb on - strand, within PGA1_c04630at 456.312 kb on + strand, within PGA1_c04630at 456.334 kb on - strand, within PGA1_c04630at 456.347 kb on - strand, within PGA1_c04630at 456.349 kb on + strand, within PGA1_c04630at 456.351 kb on + strand, within PGA1_c04630at 456.351 kb on + strand, within PGA1_c04630at 456.351 kb on + strand, within PGA1_c04630at 456.407 kb on + strand, within PGA1_c04630at 456.415 kb on - strand, within PGA1_c04630at 456.415 kb on - strand, within PGA1_c04630at 456.415 kb on - strand, within PGA1_c04630at 456.415 kb on - strand, within PGA1_c04630at 456.457 kb on + strand, within PGA1_c04630at 456.511 kb on - strand, within PGA1_c04630at 456.513 kb on - strand, within PGA1_c04630at 456.532 kb on + strand, within PGA1_c04630at 456.532 kb on + strand, within PGA1_c04630at 456.540 kb on - strand, within PGA1_c04630at 456.540 kb on - strand, within PGA1_c04630at 456.540 kb on - strand, within PGA1_c04630at 456.555 kb on + strand, within PGA1_c04630at 456.563 kb on - strand, within PGA1_c04630at 456.590 kb on + strand, within PGA1_c04630at 456.637 kb on - strand, within PGA1_c04630at 456.662 kb on - strand, within PGA1_c04630at 456.662 kb on - strand, within PGA1_c04630at 456.709 kb on + strand, within PGA1_c04630at 456.717 kb on - strand, within PGA1_c04630at 456.797 kb on + strandat 456.797 kb on + strandat 456.800 kb on - strandat 456.805 kb on - strandat 456.805 kb on - strandat 456.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml
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454,808 + PGA1_c04610 0.56 +0.0
454,808 + PGA1_c04610 0.56 -1.2
454,808 + PGA1_c04610 0.56 -0.2
454,808 + PGA1_c04610 0.56 +0.2
454,816 - PGA1_c04610 0.57 -0.6
454,816 - PGA1_c04610 0.57 -0.8
454,816 - PGA1_c04610 0.57 +0.4
454,816 - PGA1_c04610 0.57 +0.4
454,816 - PGA1_c04610 0.57 +2.9
454,816 - PGA1_c04610 0.57 -0.5
454,857 - PGA1_c04610 0.63 -0.5
454,887 - PGA1_c04610 0.68 +0.9
454,897 - PGA1_c04610 0.69 +0.6
454,897 - PGA1_c04610 0.69 +0.9
454,929 + PGA1_c04610 0.74 -1.4
454,934 + PGA1_c04610 0.75 -1.4
454,942 + PGA1_c04610 0.76 -0.4
454,963 - PGA1_c04610 0.79 +0.6
454,982 - PGA1_c04610 0.82 -0.2
454,988 - PGA1_c04610 0.83 -0.4
455,011 + PGA1_c04610 0.86 -0.1
455,087 + -0.5
455,112 - +0.1
455,135 - +0.1
455,144 - +1.2
455,207 + +1.4
455,215 - -0.2
455,215 - +0.6
455,215 - +0.4
455,246 + +0.6
455,247 + -0.3
455,247 + -0.6
455,247 + +0.2
455,247 + +1.4
455,247 + -0.4
455,247 + -0.4
455,247 + -0.4
455,247 + -2.2
455,247 + +0.3
455,247 + -0.9
455,247 + +0.6
455,247 + +1.1
455,247 + -0.2
455,247 + -0.5
455,247 + +0.2
455,255 - +1.5
455,255 - +0.2
455,255 - +0.2
455,255 - -1.3
455,255 - +0.8
455,255 - +1.1
455,255 - -0.7
455,255 - +2.0
455,257 - +1.2
455,257 - -0.4
455,283 + +1.0
455,300 - +1.5
455,338 - PGA1_c04620 0.10 +0.2
455,369 - PGA1_c04620 0.17 -0.5
455,371 + PGA1_c04620 0.18 +0.0
455,379 - PGA1_c04620 0.20 +0.3
455,379 - PGA1_c04620 0.20 +0.1
455,379 - PGA1_c04620 0.20 +0.3
455,498 - PGA1_c04620 0.47 +0.3
455,498 - PGA1_c04620 0.47 +1.2
455,523 + PGA1_c04620 0.53 -0.2
455,641 + PGA1_c04620 0.81 +0.6
455,653 + PGA1_c04620 0.83 +0.3
455,655 - PGA1_c04620 0.84 +0.7
455,661 - PGA1_c04620 0.85 +1.2
455,661 - PGA1_c04620 0.85 +0.1
455,722 - +0.0
455,727 - -0.1
455,735 - +0.8
455,741 - +0.3
455,745 - -0.4
455,750 - -0.7
455,792 + -0.9
455,849 + +0.3
455,857 - +0.2
455,857 - +0.9
455,857 - +1.6
455,939 - PGA1_c04630 0.12 +2.6
455,961 + PGA1_c04630 0.14 +0.9
455,961 + PGA1_c04630 0.14 +0.3
455,961 + PGA1_c04630 0.14 -0.1
455,999 + PGA1_c04630 0.18 -0.6
456,016 - PGA1_c04630 0.19 +0.5
456,029 - PGA1_c04630 0.20 -0.3
456,060 - PGA1_c04630 0.23 -2.1
456,078 + PGA1_c04630 0.25 -0.6
456,096 - PGA1_c04630 0.26 +1.6
456,099 + PGA1_c04630 0.27 +0.6
456,107 - PGA1_c04630 0.27 +1.0
456,107 - PGA1_c04630 0.27 +1.4
456,125 + PGA1_c04630 0.29 +0.2
456,125 + PGA1_c04630 0.29 +0.6
456,125 + PGA1_c04630 0.29 +0.4
456,125 + PGA1_c04630 0.29 +0.0
456,125 + PGA1_c04630 0.29 +0.1
456,133 - PGA1_c04630 0.30 +0.1
456,199 - PGA1_c04630 0.36 +0.6
456,218 + PGA1_c04630 0.38 -1.1
456,232 - PGA1_c04630 0.39 -0.8
456,307 + PGA1_c04630 0.46 +1.0
456,307 - PGA1_c04630 0.46 -1.9
456,312 + PGA1_c04630 0.46 +0.2
456,334 - PGA1_c04630 0.48 +0.5
456,347 - PGA1_c04630 0.49 -0.1
456,349 + PGA1_c04630 0.49 -0.1
456,351 + PGA1_c04630 0.50 +0.8
456,351 + PGA1_c04630 0.50 +0.1
456,351 + PGA1_c04630 0.50 -4.2
456,407 + PGA1_c04630 0.55 +0.4
456,415 - PGA1_c04630 0.56 +0.7
456,415 - PGA1_c04630 0.56 +0.3
456,415 - PGA1_c04630 0.56 +0.5
456,415 - PGA1_c04630 0.56 +1.0
456,457 + PGA1_c04630 0.59 +0.9
456,511 - PGA1_c04630 0.64 -0.7
456,513 - PGA1_c04630 0.64 +0.1
456,532 + PGA1_c04630 0.66 +0.3
456,532 + PGA1_c04630 0.66 -0.2
456,540 - PGA1_c04630 0.67 +1.5
456,540 - PGA1_c04630 0.67 +0.2
456,540 - PGA1_c04630 0.67 -0.8
456,555 + PGA1_c04630 0.68 +1.1
456,563 - PGA1_c04630 0.69 +1.2
456,590 + PGA1_c04630 0.72 -0.5
456,637 - PGA1_c04630 0.76 +0.1
456,662 - PGA1_c04630 0.78 -2.0
456,662 - PGA1_c04630 0.78 -0.1
456,709 + PGA1_c04630 0.82 +1.4
456,717 - PGA1_c04630 0.83 +2.3
456,797 + -1.4
456,797 + +0.1
456,800 - +0.3
456,805 - +0.0
456,805 - -0.1
456,831 + -0.1

Or see this region's nucleotide sequence