Experiment: m.b. Thallium(I) acetate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35980 and PGA1_c35990 overlap by 1 nucleotides PGA1_c35990 and PGA1_c36000 are separated by 24 nucleotides PGA1_c36000 and PGA1_c36010 are separated by 15 nucleotides PGA1_c36010 and PGA1_c36020 overlap by 4 nucleotides
PGA1_c35980: PGA1_c35980 - lipopolysaccharide export system ATP-binding protein LptB, at 3,766,950 to 3,767,708
_c35980
PGA1_c35990: PGA1_c35990 - OstA-like protein, similar to lipopolysaccharide export system protein LptA, at 3,767,708 to 3,768,187
_c35990
PGA1_c36000: PGA1_c36000 - Protein of unknown function (DUF1239)., at 3,768,212 to 3,768,811
_c36000
PGA1_c36010: PGA1_c36010 - arabinose 5-phosphate isomerase KdsD, at 3,768,827 to 3,769,798
_c36010
PGA1_c36020: PGA1_c36020 - putative 3'-5'-exonuclease, at 3,769,795 to 3,770,409
_c36020
Position (kb)
3768
3769 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.002 mg/ml remove 3,768,832 - -1.4 3,768,832 - -0.9 3,768,832 - +2.0 3,768,832 - +0.4 3,769,801 - -0.3 3,769,801 - -0.1 3,769,801 - -0.5 3,769,801 - +2.1 3,769,801 - +0.9 3,769,801 - -3.4 3,769,801 - +0.1 3,769,801 - +0.6
Or see this region's nucleotide sequence