Strain Fitness in Marinobacter adhaerens HP15 around HP15_2806

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2804 and HP15_2805 are separated by 1 nucleotidesHP15_2805 and HP15_2806 are separated by 21 nucleotidesHP15_2806 and HP15_2807 overlap by 1 nucleotides HP15_2804: HP15_2804 - oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein, at 2,951,714 to 2,953,732 _2804 HP15_2805: HP15_2805 - permease protein, ABC-type oligopeptide transporter, at 2,953,734 to 2,954,654 _2805 HP15_2806: HP15_2806 - permease protein, ABC-type oligopeptide transporter, at 2,954,676 to 2,955,593 _2806 HP15_2807: HP15_2807 - substrate-binding protein, ABC-type oligopeptide transporter, at 2,955,593 to 2,957,128 _2807 Position (kb) 2954 2955 2956Strain fitness (log2 ratio) -2 -1 0 1 2at 2953.769 kb on + strandat 2953.819 kb on + strandat 2953.998 kb on + strand, within HP15_2805at 2954.006 kb on - strand, within HP15_2805at 2954.006 kb on - strand, within HP15_2805at 2954.037 kb on - strand, within HP15_2805at 2954.056 kb on - strand, within HP15_2805at 2954.086 kb on - strand, within HP15_2805at 2954.086 kb on - strand, within HP15_2805at 2954.175 kb on + strand, within HP15_2805at 2954.175 kb on + strand, within HP15_2805at 2954.175 kb on + strand, within HP15_2805at 2954.175 kb on + strand, within HP15_2805at 2954.300 kb on + strand, within HP15_2805at 2954.378 kb on - strand, within HP15_2805at 2954.397 kb on - strand, within HP15_2805at 2954.425 kb on - strand, within HP15_2805at 2954.430 kb on - strand, within HP15_2805at 2954.533 kb on - strand, within HP15_2805at 2954.591 kb on + strandat 2954.599 kb on - strandat 2954.647 kb on - strandat 2954.725 kb on + strandat 2954.762 kb on + strandat 2954.863 kb on - strand, within HP15_2806at 2954.954 kb on + strand, within HP15_2806at 2955.004 kb on + strand, within HP15_2806at 2955.005 kb on - strand, within HP15_2806at 2955.005 kb on - strand, within HP15_2806at 2955.014 kb on + strand, within HP15_2806at 2955.016 kb on + strand, within HP15_2806at 2955.019 kb on - strand, within HP15_2806at 2955.021 kb on + strand, within HP15_2806at 2955.063 kb on - strand, within HP15_2806at 2955.065 kb on + strand, within HP15_2806at 2955.083 kb on - strand, within HP15_2806at 2955.154 kb on - strand, within HP15_2806at 2955.165 kb on + strand, within HP15_2806at 2955.174 kb on + strand, within HP15_2806at 2955.180 kb on + strand, within HP15_2806at 2955.182 kb on - strand, within HP15_2806at 2955.261 kb on + strand, within HP15_2806at 2955.279 kb on - strand, within HP15_2806at 2955.294 kb on - strand, within HP15_2806at 2955.307 kb on + strand, within HP15_2806at 2955.422 kb on + strand, within HP15_2806at 2955.423 kb on + strand, within HP15_2806at 2955.429 kb on + strand, within HP15_2806at 2955.486 kb on + strand, within HP15_2806at 2955.494 kb on - strand, within HP15_2806at 2955.593 kb on - strandat 2955.660 kb on - strandat 2955.705 kb on + strandat 2955.713 kb on - strandat 2955.728 kb on + strandat 2955.827 kb on - strand, within HP15_2807at 2956.003 kb on + strand, within HP15_2807at 2956.094 kb on - strand, within HP15_2807at 2956.104 kb on + strand, within HP15_2807at 2956.121 kb on + strand, within HP15_2807at 2956.150 kb on + strand, within HP15_2807at 2956.251 kb on - strand, within HP15_2807at 2956.270 kb on + strand, within HP15_2807at 2956.270 kb on + strand, within HP15_2807at 2956.278 kb on - strand, within HP15_2807at 2956.479 kb on + strand, within HP15_2807at 2956.536 kb on + strand, within HP15_2807at 2956.536 kb on + strand, within HP15_2807at 2956.544 kb on - strand, within HP15_2807at 2956.561 kb on + strand, within HP15_2807at 2956.561 kb on + strand, within HP15_2807at 2956.561 kb on + strand, within HP15_2807at 2956.561 kb on + strand, within HP15_2807at 2956.561 kb on + strand, within HP15_2807at 2956.569 kb on - strand, within HP15_2807at 2956.569 kb on - strand, within HP15_2807at 2956.569 kb on - strand, within HP15_2807at 2956.569 kb on - strand, within HP15_2807

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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2,953,769 + -0.4
2,953,819 + +1.3
2,953,998 + HP15_2805 0.29 +0.2
2,954,006 - HP15_2805 0.30 -0.4
2,954,006 - HP15_2805 0.30 +0.3
2,954,037 - HP15_2805 0.33 -0.2
2,954,056 - HP15_2805 0.35 +1.8
2,954,086 - HP15_2805 0.38 -0.2
2,954,086 - HP15_2805 0.38 +0.2
2,954,175 + HP15_2805 0.48 +0.2
2,954,175 + HP15_2805 0.48 +0.4
2,954,175 + HP15_2805 0.48 -0.6
2,954,175 + HP15_2805 0.48 +0.3
2,954,300 + HP15_2805 0.61 -0.7
2,954,378 - HP15_2805 0.70 +0.1
2,954,397 - HP15_2805 0.72 +1.0
2,954,425 - HP15_2805 0.75 +0.8
2,954,430 - HP15_2805 0.76 +0.3
2,954,533 - HP15_2805 0.87 +0.5
2,954,591 + +0.2
2,954,599 - -0.1
2,954,647 - +0.6
2,954,725 + +0.8
2,954,762 + +0.4
2,954,863 - HP15_2806 0.20 +0.6
2,954,954 + HP15_2806 0.30 +0.5
2,955,004 + HP15_2806 0.36 +1.2
2,955,005 - HP15_2806 0.36 +1.0
2,955,005 - HP15_2806 0.36 -0.5
2,955,014 + HP15_2806 0.37 +0.4
2,955,016 + HP15_2806 0.37 -0.4
2,955,019 - HP15_2806 0.37 +0.2
2,955,021 + HP15_2806 0.38 +0.6
2,955,063 - HP15_2806 0.42 -2.0
2,955,065 + HP15_2806 0.42 +1.7
2,955,083 - HP15_2806 0.44 +0.2
2,955,154 - HP15_2806 0.52 +0.0
2,955,165 + HP15_2806 0.53 +0.3
2,955,174 + HP15_2806 0.54 +0.3
2,955,180 + HP15_2806 0.55 -0.1
2,955,182 - HP15_2806 0.55 +2.0
2,955,261 + HP15_2806 0.64 +0.0
2,955,279 - HP15_2806 0.66 +0.3
2,955,294 - HP15_2806 0.67 +0.7
2,955,307 + HP15_2806 0.69 +0.2
2,955,422 + HP15_2806 0.81 +0.4
2,955,423 + HP15_2806 0.81 +0.2
2,955,429 + HP15_2806 0.82 -0.3
2,955,486 + HP15_2806 0.88 +0.4
2,955,494 - HP15_2806 0.89 -0.3
2,955,593 - +0.8
2,955,660 - +0.7
2,955,705 + +0.6
2,955,713 - -0.2
2,955,728 + +0.9
2,955,827 - HP15_2807 0.15 -0.9
2,956,003 + HP15_2807 0.27 -0.2
2,956,094 - HP15_2807 0.33 -0.0
2,956,104 + HP15_2807 0.33 -0.2
2,956,121 + HP15_2807 0.34 -0.1
2,956,150 + HP15_2807 0.36 -0.1
2,956,251 - HP15_2807 0.43 +0.1
2,956,270 + HP15_2807 0.44 +0.4
2,956,270 + HP15_2807 0.44 -0.2
2,956,278 - HP15_2807 0.45 -0.4
2,956,479 + HP15_2807 0.58 +0.4
2,956,536 + HP15_2807 0.61 -0.3
2,956,536 + HP15_2807 0.61 -1.0
2,956,544 - HP15_2807 0.62 -0.4
2,956,561 + HP15_2807 0.63 +0.0
2,956,561 + HP15_2807 0.63 +1.2
2,956,561 + HP15_2807 0.63 +1.6
2,956,561 + HP15_2807 0.63 -0.2
2,956,561 + HP15_2807 0.63 -0.6
2,956,569 - HP15_2807 0.64 +0.4
2,956,569 - HP15_2807 0.64 +0.2
2,956,569 - HP15_2807 0.64 +0.3
2,956,569 - HP15_2807 0.64 -0.1

Or see this region's nucleotide sequence