Strain Fitness in Marinobacter adhaerens HP15 around HP15_2635

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2633 and HP15_2634 are separated by 99 nucleotidesHP15_2634 and HP15_2635 are separated by 6 nucleotidesHP15_2635 and HP15_2636 are separated by 148 nucleotidesHP15_2636 and HP15_2637 are separated by 117 nucleotides HP15_2633: HP15_2633 - conserved hypothetical protein, secreted, at 2,784,417 to 2,785,247 _2633 HP15_2634: HP15_2634 - lipoprotein, at 2,785,347 to 2,786,054 _2634 HP15_2635: HP15_2635 - transcriptional regulator, LysR-family protein, at 2,786,061 to 2,786,960 _2635 HP15_2636: HP15_2636 - conserved hypothetical protein, at 2,787,109 to 2,787,303 _2636 HP15_2637: HP15_2637 - long-chain-fatty-acid-CoA ligase, at 2,787,421 to 2,789,103 _2637 Position (kb) 2786 2787Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2785.115 kb on - strand, within HP15_2633at 2785.118 kb on + strand, within HP15_2633at 2785.192 kb on - strandat 2785.587 kb on + strand, within HP15_2634at 2785.661 kb on + strand, within HP15_2634at 2785.705 kb on + strand, within HP15_2634at 2785.732 kb on + strand, within HP15_2634at 2785.743 kb on + strand, within HP15_2634at 2785.783 kb on + strand, within HP15_2634at 2785.813 kb on + strand, within HP15_2634at 2785.961 kb on + strand, within HP15_2634at 2785.964 kb on - strand, within HP15_2634at 2785.964 kb on - strand, within HP15_2634at 2786.036 kb on - strandat 2786.115 kb on - strandat 2786.136 kb on + strandat 2786.220 kb on + strand, within HP15_2635at 2786.230 kb on - strand, within HP15_2635at 2786.275 kb on + strand, within HP15_2635at 2786.313 kb on - strand, within HP15_2635at 2786.350 kb on - strand, within HP15_2635at 2786.451 kb on + strand, within HP15_2635at 2786.613 kb on + strand, within HP15_2635at 2786.698 kb on + strand, within HP15_2635at 2786.715 kb on - strand, within HP15_2635at 2786.785 kb on + strand, within HP15_2635at 2786.830 kb on + strand, within HP15_2635at 2786.830 kb on + strand, within HP15_2635at 2786.867 kb on - strand, within HP15_2635at 2787.131 kb on + strand, within HP15_2636at 2787.165 kb on - strand, within HP15_2636at 2787.174 kb on + strand, within HP15_2636at 2787.419 kb on + strandat 2787.542 kb on + strandat 2787.550 kb on - strandat 2787.709 kb on - strand, within HP15_2637at 2787.748 kb on - strand, within HP15_2637at 2787.845 kb on + strand, within HP15_2637at 2787.853 kb on - strand, within HP15_2637

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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2,785,115 - HP15_2633 0.84 +0.2
2,785,118 + HP15_2633 0.84 +0.1
2,785,192 - -1.2
2,785,587 + HP15_2634 0.34 -0.1
2,785,661 + HP15_2634 0.44 -0.9
2,785,705 + HP15_2634 0.51 +0.1
2,785,732 + HP15_2634 0.54 +0.6
2,785,743 + HP15_2634 0.56 +1.0
2,785,783 + HP15_2634 0.62 +0.2
2,785,813 + HP15_2634 0.66 +0.0
2,785,961 + HP15_2634 0.87 -1.2
2,785,964 - HP15_2634 0.87 +0.2
2,785,964 - HP15_2634 0.87 -3.0
2,786,036 - -1.0
2,786,115 - +0.4
2,786,136 + +1.3
2,786,220 + HP15_2635 0.18 -0.5
2,786,230 - HP15_2635 0.19 -1.0
2,786,275 + HP15_2635 0.24 -0.9
2,786,313 - HP15_2635 0.28 -0.9
2,786,350 - HP15_2635 0.32 -0.9
2,786,451 + HP15_2635 0.43 -0.5
2,786,613 + HP15_2635 0.61 +1.9
2,786,698 + HP15_2635 0.71 -0.1
2,786,715 - HP15_2635 0.73 +0.9
2,786,785 + HP15_2635 0.80 -0.5
2,786,830 + HP15_2635 0.85 -1.0
2,786,830 + HP15_2635 0.85 -0.2
2,786,867 - HP15_2635 0.90 -0.3
2,787,131 + HP15_2636 0.11 -0.1
2,787,165 - HP15_2636 0.29 +1.9
2,787,174 + HP15_2636 0.33 -0.0
2,787,419 + +0.5
2,787,542 + -0.6
2,787,550 - +0.0
2,787,709 - HP15_2637 0.17 +0.3
2,787,748 - HP15_2637 0.19 +0.2
2,787,845 + HP15_2637 0.25 -3.8
2,787,853 - HP15_2637 0.26 -0.2

Or see this region's nucleotide sequence