Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1614 and HP15_1615 are separated by 137 nucleotides HP15_1615 and HP15_1616 are separated by 130 nucleotides HP15_1616 and HP15_1618 are separated by 14 nucleotides
HP15_1614: HP15_1614 - conserved hypothetical protein, at 1,710,746 to 1,711,618
_1614
HP15_1615: HP15_1615 - TonB-dependent receptor, plug, at 1,711,756 to 1,713,906
_1615
HP15_1616: HP15_1616 - protein containing DnaJ domain, at 1,714,037 to 1,714,681
_1616
HP15_1618: HP15_1618 - uncharacterized conserved protein UCP026166, sodium bile acid symporter, at 1,714,696 to 1,715,451
_1618
Position (kb)
1711
1712
1713
1714 Strain fitness (log2 ratio)
-2
-1
0
1 at 1710.869 kb on + strand, within HP15_1614 at 1710.990 kb on + strand, within HP15_1614 at 1711.097 kb on + strand, within HP15_1614 at 1711.219 kb on + strand, within HP15_1614 at 1711.291 kb on - strand, within HP15_1614 at 1711.313 kb on + strand, within HP15_1614 at 1711.319 kb on - strand, within HP15_1614 at 1711.626 kb on - strand at 1711.717 kb on + strand at 1711.718 kb on - strand at 1711.735 kb on - strand at 1711.888 kb on - strand at 1711.938 kb on + strand at 1712.092 kb on + strand, within HP15_1615 at 1712.114 kb on - strand, within HP15_1615 at 1712.116 kb on + strand, within HP15_1615 at 1712.176 kb on + strand, within HP15_1615 at 1712.325 kb on + strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.333 kb on - strand, within HP15_1615 at 1712.365 kb on + strand, within HP15_1615 at 1712.465 kb on + strand, within HP15_1615 at 1712.612 kb on + strand, within HP15_1615 at 1712.644 kb on - strand, within HP15_1615 at 1712.771 kb on - strand, within HP15_1615 at 1712.994 kb on - strand, within HP15_1615 at 1713.047 kb on - strand, within HP15_1615 at 1713.120 kb on + strand, within HP15_1615 at 1713.221 kb on + strand, within HP15_1615 at 1713.317 kb on + strand, within HP15_1615 at 1713.340 kb on + strand, within HP15_1615 at 1713.348 kb on - strand, within HP15_1615 at 1713.381 kb on - strand, within HP15_1615 at 1713.404 kb on + strand, within HP15_1615 at 1713.469 kb on + strand, within HP15_1615 at 1713.477 kb on - strand, within HP15_1615 at 1713.477 kb on - strand, within HP15_1615 at 1713.843 kb on + strand at 1713.861 kb on - strand at 1713.945 kb on - strand at 1714.004 kb on - strand at 1714.062 kb on - strand at 1714.067 kb on - strand at 1714.210 kb on + strand, within HP15_1616 at 1714.219 kb on - strand, within HP15_1616 at 1714.243 kb on - strand, within HP15_1616 at 1714.306 kb on + strand, within HP15_1616 at 1714.306 kb on + strand, within HP15_1616 at 1714.314 kb on - strand, within HP15_1616 at 1714.354 kb on + strand, within HP15_1616 at 1714.517 kb on - strand, within HP15_1616 at 1714.529 kb on - strand, within HP15_1616 at 1714.663 kb on - strand at 1714.677 kb on + strand at 1714.720 kb on - strand at 1714.749 kb on - strand at 1714.765 kb on - strand at 1714.882 kb on + strand, within HP15_1618
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 1,710,869 + HP15_1614 0.14 -0.4 1,710,990 + HP15_1614 0.28 -0.3 1,711,097 + HP15_1614 0.40 -0.2 1,711,219 + HP15_1614 0.54 +0.5 1,711,291 - HP15_1614 0.62 -0.0 1,711,313 + HP15_1614 0.65 -0.3 1,711,319 - HP15_1614 0.66 -1.7 1,711,626 - -0.7 1,711,717 + -1.3 1,711,718 - +0.3 1,711,735 - +1.2 1,711,888 - -0.6 1,711,938 + -0.3 1,712,092 + HP15_1615 0.16 -0.1 1,712,114 - HP15_1615 0.17 +0.2 1,712,116 + HP15_1615 0.17 -0.5 1,712,176 + HP15_1615 0.20 -0.5 1,712,325 + HP15_1615 0.26 +0.7 1,712,333 - HP15_1615 0.27 -0.3 1,712,333 - HP15_1615 0.27 +0.3 1,712,333 - HP15_1615 0.27 -0.9 1,712,333 - HP15_1615 0.27 -2.2 1,712,365 + HP15_1615 0.28 +0.3 1,712,465 + HP15_1615 0.33 -1.7 1,712,612 + HP15_1615 0.40 -0.1 1,712,644 - HP15_1615 0.41 -0.2 1,712,771 - HP15_1615 0.47 -0.1 1,712,994 - HP15_1615 0.58 -0.1 1,713,047 - HP15_1615 0.60 +0.2 1,713,120 + HP15_1615 0.63 -0.5 1,713,221 + HP15_1615 0.68 +0.3 1,713,317 + HP15_1615 0.73 -0.7 1,713,340 + HP15_1615 0.74 -0.4 1,713,348 - HP15_1615 0.74 -0.1 1,713,381 - HP15_1615 0.76 -0.6 1,713,404 + HP15_1615 0.77 +0.2 1,713,469 + HP15_1615 0.80 -0.3 1,713,477 - HP15_1615 0.80 -0.7 1,713,477 - HP15_1615 0.80 -2.7 1,713,843 + -0.7 1,713,861 - -0.2 1,713,945 - +0.9 1,714,004 - -0.9 1,714,062 - -0.6 1,714,067 - -0.4 1,714,210 + HP15_1616 0.27 +0.1 1,714,219 - HP15_1616 0.28 +0.6 1,714,243 - HP15_1616 0.32 +0.3 1,714,306 + HP15_1616 0.42 +0.2 1,714,306 + HP15_1616 0.42 -0.7 1,714,314 - HP15_1616 0.43 +0.2 1,714,354 + HP15_1616 0.49 +0.7 1,714,517 - HP15_1616 0.74 -0.3 1,714,529 - HP15_1616 0.76 -0.3 1,714,663 - +1.0 1,714,677 + +0.0 1,714,720 - -0.2 1,714,749 - -0.9 1,714,765 - -0.8 1,714,882 + HP15_1618 0.25 -1.3
Or see this region's nucleotide sequence