Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1433 and HP15_1434 are separated by 1 nucleotides HP15_1434 and HP15_1435 are separated by 150 nucleotides HP15_1435 and HP15_1436 are separated by 61 nucleotides HP15_1436 and HP15_1437 are separated by 59 nucleotides
HP15_1433: HP15_1433 - conserved hypothetical protein, secreted, at 1,512,390 to 1,512,887
_1433
HP15_1434: HP15_1434 - conserved hypothetical protein, at 1,512,889 to 1,513,209
_1434
HP15_1435: HP15_1435 - thioesterase superfamily protein, at 1,513,360 to 1,513,839
_1435
HP15_1436: HP15_1436 - protein containing DUF1330, at 1,513,901 to 1,514,191
_1436
HP15_1437: HP15_1437 - transcriptional regulator, LysR family protein, at 1,514,251 to 1,515,096
_1437
Position (kb)
1513
1514 Strain fitness (log2 ratio)
-1
0
1
2 at 1512.513 kb on - strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.577 kb on + strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.585 kb on - strand, within HP15_1433 at 1512.662 kb on - strand, within HP15_1433 at 1512.852 kb on + strand at 1512.968 kb on - strand, within HP15_1434 at 1513.017 kb on - strand, within HP15_1434 at 1513.024 kb on - strand, within HP15_1434 at 1513.073 kb on + strand, within HP15_1434 at 1513.095 kb on + strand, within HP15_1434 at 1513.121 kb on - strand, within HP15_1434 at 1513.141 kb on - strand, within HP15_1434 at 1513.417 kb on - strand, within HP15_1435 at 1513.486 kb on - strand, within HP15_1435 at 1513.626 kb on - strand, within HP15_1435 at 1513.683 kb on + strand, within HP15_1435 at 1513.691 kb on + strand, within HP15_1435 at 1513.691 kb on - strand, within HP15_1435 at 1513.691 kb on - strand, within HP15_1435 at 1513.734 kb on + strand, within HP15_1435 at 1513.759 kb on + strand, within HP15_1435 at 1513.801 kb on - strand at 1513.912 kb on + strand at 1513.983 kb on - strand, within HP15_1436 at 1514.052 kb on - strand, within HP15_1436 at 1514.089 kb on + strand, within HP15_1436 at 1514.155 kb on + strand, within HP15_1436 at 1514.163 kb on - strand at 1514.216 kb on - strand at 1514.257 kb on + strand at 1514.340 kb on + strand, within HP15_1437 at 1514.497 kb on - strand, within HP15_1437 at 1514.667 kb on + strand, within HP15_1437 at 1514.756 kb on + strand, within HP15_1437 at 1514.788 kb on + strand, within HP15_1437 at 1514.813 kb on - strand, within HP15_1437
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 1,512,513 - HP15_1433 0.25 +1.9 1,512,577 + HP15_1433 0.38 +0.0 1,512,577 + HP15_1433 0.38 +0.1 1,512,585 - HP15_1433 0.39 -0.1 1,512,585 - HP15_1433 0.39 +1.4 1,512,585 - HP15_1433 0.39 -0.2 1,512,662 - HP15_1433 0.55 -0.6 1,512,852 + +0.4 1,512,968 - HP15_1434 0.25 +1.7 1,513,017 - HP15_1434 0.40 -0.0 1,513,024 - HP15_1434 0.42 +0.3 1,513,073 + HP15_1434 0.57 +0.8 1,513,095 + HP15_1434 0.64 -0.5 1,513,121 - HP15_1434 0.72 +0.6 1,513,141 - HP15_1434 0.79 -0.1 1,513,417 - HP15_1435 0.12 -0.3 1,513,486 - HP15_1435 0.26 -0.6 1,513,626 - HP15_1435 0.55 +0.4 1,513,683 + HP15_1435 0.67 -0.6 1,513,691 + HP15_1435 0.69 -0.7 1,513,691 - HP15_1435 0.69 -0.6 1,513,691 - HP15_1435 0.69 -0.4 1,513,734 + HP15_1435 0.78 -0.1 1,513,759 + HP15_1435 0.83 +0.1 1,513,801 - +0.3 1,513,912 + +0.9 1,513,983 - HP15_1436 0.28 +0.4 1,514,052 - HP15_1436 0.52 -0.6 1,514,089 + HP15_1436 0.65 +0.8 1,514,155 + HP15_1436 0.87 -0.9 1,514,163 - -0.0 1,514,216 - +0.4 1,514,257 + +0.4 1,514,340 + HP15_1437 0.11 -0.2 1,514,497 - HP15_1437 0.29 -0.3 1,514,667 + HP15_1437 0.49 -0.4 1,514,756 + HP15_1437 0.60 -0.1 1,514,788 + HP15_1437 0.63 -0.0 1,514,813 - HP15_1437 0.66 +0.1
Or see this region's nucleotide sequence