Strain Fitness in Marinobacter adhaerens HP15 around HP15_1430

Experiment: Tween 20

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1428 and HP15_1429 are separated by 255 nucleotidesHP15_1429 and HP15_1430 are separated by 65 nucleotidesHP15_1430 and HP15_1431 are separated by 624 nucleotidesHP15_1431 and HP15_1432 are separated by 65 nucleotides HP15_1428: HP15_1428 - hypothetical protein, at 1,509,399 to 1,509,590 _1428 HP15_1429: HP15_1429 - DinB family protein, at 1,509,846 to 1,510,388 _1429 HP15_1430: HP15_1430 - glutathione S-transferase family protein, at 1,510,454 to 1,511,050 _1430 HP15_1431: HP15_1431 - zinc finger, C4 DksA/TraR-type, at 1,511,675 to 1,511,974 _1431 HP15_1432: HP15_1432 - conserved hypothetical protein, membrane, at 1,512,040 to 1,512,318 _1432 Position (kb) 1510 1511 1512Strain fitness (log2 ratio) -1 0 1at 1509.483 kb on + strand, within HP15_1428at 1509.484 kb on - strand, within HP15_1428at 1509.510 kb on - strand, within HP15_1428at 1509.603 kb on + strandat 1509.618 kb on + strandat 1509.626 kb on - strandat 1509.649 kb on + strandat 1509.757 kb on - strandat 1509.763 kb on + strandat 1509.856 kb on + strandat 1509.868 kb on - strandat 1509.910 kb on + strand, within HP15_1429at 1509.920 kb on + strand, within HP15_1429at 1510.003 kb on + strand, within HP15_1429at 1510.011 kb on - strand, within HP15_1429at 1510.135 kb on - strand, within HP15_1429at 1510.152 kb on + strand, within HP15_1429at 1510.301 kb on + strand, within HP15_1429at 1510.459 kb on - strandat 1510.459 kb on - strandat 1510.515 kb on + strand, within HP15_1430at 1510.523 kb on - strand, within HP15_1430at 1510.584 kb on + strand, within HP15_1430at 1510.584 kb on + strand, within HP15_1430at 1510.625 kb on + strand, within HP15_1430at 1510.787 kb on + strand, within HP15_1430at 1510.787 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.816 kb on + strand, within HP15_1430at 1510.824 kb on - strand, within HP15_1430at 1510.856 kb on - strand, within HP15_1430at 1510.872 kb on + strand, within HP15_1430at 1511.029 kb on + strandat 1511.054 kb on + strandat 1511.145 kb on + strandat 1511.153 kb on - strandat 1511.257 kb on - strandat 1511.480 kb on - strandat 1511.669 kb on - strandat 1511.937 kb on + strand, within HP15_1431at 1511.947 kb on + strandat 1511.971 kb on - strandat 1512.020 kb on + strandat 1512.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
remove
1,509,483 + HP15_1428 0.44 +0.0
1,509,484 - HP15_1428 0.44 -0.3
1,509,510 - HP15_1428 0.58 -0.6
1,509,603 + -0.6
1,509,618 + +0.3
1,509,626 - -0.5
1,509,649 + -0.6
1,509,757 - -0.4
1,509,763 + +0.7
1,509,856 + -0.6
1,509,868 - +0.2
1,509,910 + HP15_1429 0.12 +0.7
1,509,920 + HP15_1429 0.14 +0.8
1,510,003 + HP15_1429 0.29 +0.4
1,510,011 - HP15_1429 0.30 -0.6
1,510,135 - HP15_1429 0.53 -0.0
1,510,152 + HP15_1429 0.56 +0.7
1,510,301 + HP15_1429 0.84 +0.2
1,510,459 - +0.5
1,510,459 - -0.0
1,510,515 + HP15_1430 0.10 -0.1
1,510,523 - HP15_1430 0.12 +0.4
1,510,584 + HP15_1430 0.22 +0.5
1,510,584 + HP15_1430 0.22 -0.2
1,510,625 + HP15_1430 0.29 +0.1
1,510,787 + HP15_1430 0.56 -0.2
1,510,787 + HP15_1430 0.56 +0.9
1,510,816 + HP15_1430 0.61 +0.3
1,510,816 + HP15_1430 0.61 -0.2
1,510,816 + HP15_1430 0.61 +0.4
1,510,816 + HP15_1430 0.61 -0.3
1,510,824 - HP15_1430 0.62 +0.3
1,510,856 - HP15_1430 0.67 +0.1
1,510,872 + HP15_1430 0.70 -1.1
1,511,029 + +0.7
1,511,054 + +0.5
1,511,145 + -0.4
1,511,153 - +0.3
1,511,257 - -0.8
1,511,480 - -1.1
1,511,669 - +0.1
1,511,937 + HP15_1431 0.87 -0.3
1,511,947 + -0.5
1,511,971 - +0.0
1,512,020 + +0.4
1,512,046 - +0.2

Or see this region's nucleotide sequence