Experiment: D-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20025 and BWI76_RS20030 overlap by 14 nucleotides BWI76_RS20030 and BWI76_RS20035 are separated by 134 nucleotides BWI76_RS20035 and BWI76_RS20040 are separated by 15 nucleotides BWI76_RS20040 and BWI76_RS20045 are separated by 11 nucleotides
BWI76_RS20025: BWI76_RS20025 - HAMP domain-containing histidine kinase, at 4,195,340 to 4,196,755
_RS20025
BWI76_RS20030: BWI76_RS20030 - DNA-binding response regulator, at 4,196,742 to 4,197,416
_RS20030
BWI76_RS20035: BWI76_RS20035 - hypothetical protein, at 4,197,551 to 4,198,531
_RS20035
BWI76_RS20040: BWI76_RS20040 - tricarboxylic transport membrane protein, at 4,198,547 to 4,198,978
_RS20040
BWI76_RS20045: BWI76_RS20045 - hypothetical protein, at 4,198,990 to 4,200,510
_RS20045
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4196.762 kb on + strand at 4196.811 kb on + strand, within BWI76_RS20030 at 4196.846 kb on + strand, within BWI76_RS20030 at 4197.056 kb on - strand, within BWI76_RS20030 at 4197.156 kb on - strand, within BWI76_RS20030 at 4197.233 kb on + strand, within BWI76_RS20030 at 4197.527 kb on + strand at 4197.603 kb on - strand at 4197.610 kb on + strand at 4197.613 kb on - strand at 4197.705 kb on + strand, within BWI76_RS20035 at 4197.852 kb on + strand, within BWI76_RS20035 at 4197.852 kb on + strand, within BWI76_RS20035 at 4198.263 kb on + strand, within BWI76_RS20035 at 4198.393 kb on + strand, within BWI76_RS20035 at 4198.677 kb on + strand, within BWI76_RS20040 at 4198.697 kb on + strand, within BWI76_RS20040 at 4198.737 kb on - strand, within BWI76_RS20040 at 4198.909 kb on - strand, within BWI76_RS20040 at 4199.204 kb on - strand, within BWI76_RS20045 at 4199.237 kb on + strand, within BWI76_RS20045 at 4199.343 kb on - strand, within BWI76_RS20045
Per-strain Table
Position Strand Gene LocusTag Fraction D-Serine (N) remove 4,196,762 + +0.0 4,196,811 + BWI76_RS20030 0.10 +0.2 4,196,846 + BWI76_RS20030 0.15 -3.2 4,197,056 - BWI76_RS20030 0.47 -0.3 4,197,156 - BWI76_RS20030 0.61 -0.4 4,197,233 + BWI76_RS20030 0.73 +1.9 4,197,527 + -1.3 4,197,603 - +0.5 4,197,610 + -0.1 4,197,613 - +1.2 4,197,705 + BWI76_RS20035 0.16 -1.6 4,197,852 + BWI76_RS20035 0.31 -2.1 4,197,852 + BWI76_RS20035 0.31 -0.7 4,198,263 + BWI76_RS20035 0.73 -0.5 4,198,393 + BWI76_RS20035 0.86 -3.5 4,198,677 + BWI76_RS20040 0.30 +0.2 4,198,697 + BWI76_RS20040 0.35 +3.6 4,198,737 - BWI76_RS20040 0.44 -1.5 4,198,909 - BWI76_RS20040 0.84 -0.3 4,199,204 - BWI76_RS20045 0.14 +2.2 4,199,237 + BWI76_RS20045 0.16 +1.1 4,199,343 - BWI76_RS20045 0.23 +0.2
Or see this region's nucleotide sequence