Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12650

Experiment: D-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12640 and BWI76_RS12645 are separated by 125 nucleotidesBWI76_RS12645 and BWI76_RS12650 are separated by 199 nucleotidesBWI76_RS12650 and BWI76_RS12655 are separated by 56 nucleotidesBWI76_RS12655 and BWI76_RS12660 are separated by 177 nucleotidesBWI76_RS12660 and BWI76_RS12665 are separated by 154 nucleotides BWI76_RS12640: BWI76_RS12640 - hypothetical protein, at 2,638,173 to 2,638,802 _RS12640 BWI76_RS12645: BWI76_RS12645 - membrane protein, at 2,638,928 to 2,639,509 _RS12645 BWI76_RS12650: BWI76_RS12650 - membrane protein, at 2,639,709 to 2,640,272 _RS12650 BWI76_RS12655: BWI76_RS12655 - PTS cellobiose transporter subunit IIB, at 2,640,329 to 2,640,631 _RS12655 BWI76_RS12660: BWI76_RS12660 - hypothetical protein, at 2,640,809 to 2,641,000 _RS12660 BWI76_RS12665: BWI76_RS12665 - hypothetical protein, at 2,641,155 to 2,641,349 _RS12665 Position (kb) 2639 2640 2641Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2639.007 kb on - strand, within BWI76_RS12645at 2639.008 kb on - strand, within BWI76_RS12645at 2639.039 kb on + strand, within BWI76_RS12645at 2639.045 kb on + strand, within BWI76_RS12645at 2639.050 kb on + strand, within BWI76_RS12645at 2639.089 kb on + strand, within BWI76_RS12645at 2639.125 kb on + strand, within BWI76_RS12645at 2639.185 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.285 kb on + strand, within BWI76_RS12645at 2639.290 kb on + strand, within BWI76_RS12645at 2639.320 kb on - strand, within BWI76_RS12645at 2639.367 kb on + strand, within BWI76_RS12645at 2639.403 kb on + strand, within BWI76_RS12645at 2639.403 kb on - strand, within BWI76_RS12645at 2639.419 kb on + strand, within BWI76_RS12645at 2639.450 kb on + strand, within BWI76_RS12645at 2639.458 kb on - strandat 2639.468 kb on + strandat 2639.472 kb on + strandat 2639.480 kb on - strandat 2639.482 kb on + strandat 2639.565 kb on + strandat 2639.578 kb on - strandat 2639.598 kb on - strandat 2639.664 kb on + strandat 2639.740 kb on + strandat 2639.743 kb on - strandat 2639.745 kb on + strandat 2639.761 kb on + strandat 2639.828 kb on - strand, within BWI76_RS12650at 2639.916 kb on + strand, within BWI76_RS12650at 2639.924 kb on + strand, within BWI76_RS12650at 2639.924 kb on + strand, within BWI76_RS12650at 2639.925 kb on + strand, within BWI76_RS12650at 2639.925 kb on + strand, within BWI76_RS12650at 2639.925 kb on + strand, within BWI76_RS12650at 2639.943 kb on + strand, within BWI76_RS12650at 2639.953 kb on + strand, within BWI76_RS12650at 2640.187 kb on + strand, within BWI76_RS12650at 2640.210 kb on + strand, within BWI76_RS12650at 2640.220 kb on + strandat 2640.226 kb on + strandat 2640.227 kb on + strandat 2640.249 kb on + strandat 2640.280 kb on + strandat 2640.349 kb on - strandat 2640.352 kb on + strandat 2640.360 kb on - strand, within BWI76_RS12655at 2640.369 kb on - strand, within BWI76_RS12655at 2640.394 kb on - strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.410 kb on + strand, within BWI76_RS12655at 2640.418 kb on + strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strandat 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.418 kb on - strand, within BWI76_RS12655at 2640.425 kb on - strand, within BWI76_RS12655at 2640.427 kb on - strand, within BWI76_RS12655at 2640.447 kb on + strand, within BWI76_RS12655at 2640.450 kb on - strandat 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655at 2640.455 kb on - strand, within BWI76_RS12655at 2640.633 kb on + strandat 2640.641 kb on - strandat 2640.641 kb on - strandat 2640.641 kb on - strandat 2640.641 kb on - strandat 2640.661 kb on + strandat 2640.661 kb on + strandat 2640.747 kb on + strandat 2640.781 kb on + strandat 2640.784 kb on + strandat 2640.784 kb on - strandat 2640.834 kb on - strand, within BWI76_RS12660at 2640.836 kb on - strand, within BWI76_RS12660at 2640.836 kb on - strand, within BWI76_RS12660at 2640.851 kb on + strand, within BWI76_RS12660at 2640.851 kb on + strand, within BWI76_RS12660at 2640.857 kb on - strand, within BWI76_RS12660at 2640.857 kb on - strand, within BWI76_RS12660at 2640.857 kb on - strand, within BWI76_RS12660at 2640.858 kb on - strand, within BWI76_RS12660at 2640.859 kb on - strand, within BWI76_RS12660at 2640.883 kb on - strand, within BWI76_RS12660at 2640.958 kb on - strand, within BWI76_RS12660at 2640.958 kb on - strand, within BWI76_RS12660at 2640.978 kb on - strand, within BWI76_RS12660at 2640.983 kb on + strandat 2640.985 kb on + strandat 2640.992 kb on - strandat 2640.993 kb on + strandat 2640.993 kb on + strandat 2640.993 kb on - strandat 2640.993 kb on - strandat 2640.995 kb on + strandat 2641.036 kb on - strandat 2641.036 kb on - strandat 2641.176 kb on + strand, within BWI76_RS12665at 2641.197 kb on - strand, within BWI76_RS12665

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
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2,639,007 - BWI76_RS12645 0.14 -1.1
2,639,008 - BWI76_RS12645 0.14 +0.5
2,639,039 + BWI76_RS12645 0.19 -0.3
2,639,045 + BWI76_RS12645 0.20 +0.3
2,639,050 + BWI76_RS12645 0.21 -2.8
2,639,089 + BWI76_RS12645 0.28 -0.7
2,639,125 + BWI76_RS12645 0.34 +0.4
2,639,185 + BWI76_RS12645 0.44 -0.2
2,639,244 + BWI76_RS12645 0.54 -0.7
2,639,244 + BWI76_RS12645 0.54 -2.6
2,639,244 + BWI76_RS12645 0.54 -1.7
2,639,244 + BWI76_RS12645 0.54 +0.2
2,639,244 + BWI76_RS12645 0.54 -0.5
2,639,252 - BWI76_RS12645 0.56 -0.1
2,639,252 - BWI76_RS12645 0.56 -2.8
2,639,252 - BWI76_RS12645 0.56 +0.1
2,639,252 - BWI76_RS12645 0.56 +0.0
2,639,252 - BWI76_RS12645 0.56 +0.0
2,639,252 - BWI76_RS12645 0.56 -0.4
2,639,285 + BWI76_RS12645 0.61 +0.7
2,639,290 + BWI76_RS12645 0.62 +0.1
2,639,320 - BWI76_RS12645 0.67 +1.4
2,639,367 + BWI76_RS12645 0.75 -1.2
2,639,403 + BWI76_RS12645 0.82 -0.4
2,639,403 - BWI76_RS12645 0.82 +1.5
2,639,419 + BWI76_RS12645 0.84 -0.5
2,639,450 + BWI76_RS12645 0.90 -0.5
2,639,458 - +2.1
2,639,468 + +0.9
2,639,472 + +0.3
2,639,480 - +0.1
2,639,482 + +0.4
2,639,565 + -0.9
2,639,578 - +1.8
2,639,598 - -2.8
2,639,664 + +0.1
2,639,740 + +0.7
2,639,743 - -1.7
2,639,745 + +0.2
2,639,761 + -0.9
2,639,828 - BWI76_RS12650 0.21 +0.1
2,639,916 + BWI76_RS12650 0.37 -0.8
2,639,924 + BWI76_RS12650 0.38 +1.9
2,639,924 + BWI76_RS12650 0.38 +0.4
2,639,925 + BWI76_RS12650 0.38 -1.5
2,639,925 + BWI76_RS12650 0.38 -3.9
2,639,925 + BWI76_RS12650 0.38 -2.7
2,639,943 + BWI76_RS12650 0.41 -1.1
2,639,953 + BWI76_RS12650 0.43 -1.0
2,640,187 + BWI76_RS12650 0.85 -1.3
2,640,210 + BWI76_RS12650 0.89 -0.6
2,640,220 + +0.7
2,640,226 + +1.5
2,640,227 + +1.7
2,640,249 + +0.7
2,640,280 + +0.6
2,640,349 - -0.9
2,640,352 + +2.8
2,640,360 - BWI76_RS12655 0.10 -1.7
2,640,369 - BWI76_RS12655 0.13 -0.1
2,640,394 - BWI76_RS12655 0.21 +0.9
2,640,410 + BWI76_RS12655 0.27 +0.1
2,640,410 + BWI76_RS12655 0.27 -0.3
2,640,410 + BWI76_RS12655 0.27 +1.1
2,640,410 + BWI76_RS12655 0.27 -0.5
2,640,418 + BWI76_RS12655 0.29 -2.5
2,640,418 - BWI76_RS12655 0.29 +0.5
2,640,418 - BWI76_RS12655 0.29 +0.8
2,640,418 - BWI76_RS12655 0.29 -2.5
2,640,418 - BWI76_RS12655 0.29 +0.5
2,640,418 - BWI76_RS12655 0.29 +0.8
2,640,418 - BWI76_RS12655 0.29 -0.4
2,640,418 - BWI76_RS12655 0.29 +0.1
2,640,418 - BWI76_RS12655 0.29 +0.2
2,640,418 - BWI76_RS12655 0.29 -1.6
2,640,418 - +0.5
2,640,418 - BWI76_RS12655 0.29 -2.5
2,640,418 - BWI76_RS12655 0.29 +0.9
2,640,418 - BWI76_RS12655 0.29 -2.4
2,640,425 - BWI76_RS12655 0.32 -0.9
2,640,427 - BWI76_RS12655 0.32 -0.4
2,640,447 + BWI76_RS12655 0.39 -0.2
2,640,450 - +2.1
2,640,455 - BWI76_RS12655 0.42 -1.2
2,640,455 - BWI76_RS12655 0.42 -1.2
2,640,455 - BWI76_RS12655 0.42 -0.7
2,640,455 - BWI76_RS12655 0.42 +3.0
2,640,455 - BWI76_RS12655 0.42 -0.7
2,640,633 + -0.7
2,640,641 - -1.8
2,640,641 - -1.1
2,640,641 - -0.5
2,640,641 - +1.1
2,640,661 + +0.1
2,640,661 + -0.9
2,640,747 + -0.1
2,640,781 + +0.8
2,640,784 + -1.8
2,640,784 - +0.0
2,640,834 - BWI76_RS12660 0.13 +0.8
2,640,836 - BWI76_RS12660 0.14 +0.1
2,640,836 - BWI76_RS12660 0.14 -3.1
2,640,851 + BWI76_RS12660 0.22 +0.4
2,640,851 + BWI76_RS12660 0.22 -1.2
2,640,857 - BWI76_RS12660 0.25 -1.6
2,640,857 - BWI76_RS12660 0.25 +0.9
2,640,857 - BWI76_RS12660 0.25 -0.4
2,640,858 - BWI76_RS12660 0.26 -0.0
2,640,859 - BWI76_RS12660 0.26 +0.4
2,640,883 - BWI76_RS12660 0.39 +0.1
2,640,958 - BWI76_RS12660 0.78 +0.1
2,640,958 - BWI76_RS12660 0.78 -1.3
2,640,978 - BWI76_RS12660 0.88 +0.7
2,640,983 + -0.8
2,640,985 + +0.5
2,640,992 - -2.2
2,640,993 + -1.0
2,640,993 + -0.6
2,640,993 - -0.8
2,640,993 - +0.1
2,640,995 + +0.4
2,641,036 - +1.2
2,641,036 - -1.6
2,641,176 + BWI76_RS12665 0.11 +0.2
2,641,197 - BWI76_RS12665 0.22 -1.0

Or see this region's nucleotide sequence