Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09610

Experiment: D-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS09600 and BWI76_RS09605 are separated by 68 nucleotidesBWI76_RS09605 and BWI76_RS09610 are separated by 324 nucleotidesBWI76_RS09610 and BWI76_RS09615 are separated by 30 nucleotides BWI76_RS09600: BWI76_RS09600 - macrolide ABC transporter permease/ATP-binding protein MacB, at 2,008,593 to 2,010,539 _RS09600 BWI76_RS09605: BWI76_RS09605 - cold-shock protein, at 2,010,608 to 2,010,838 _RS09605 BWI76_RS09610: BWI76_RS09610 - ATP-dependent Clp protease adaptor ClpS, at 2,011,163 to 2,011,480 _RS09610 BWI76_RS09615: BWI76_RS09615 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,011,511 to 2,013,793 _RS09615 Position (kb) 2011 2012Strain fitness (log2 ratio) -2 -1 0 1at 2010.314 kb on - strand, within BWI76_RS09600at 2010.584 kb on + strandat 2010.592 kb on - strandat 2010.832 kb on + strandat 2011.146 kb on - strandat 2011.165 kb on + strandat 2011.267 kb on - strand, within BWI76_RS09610at 2011.337 kb on - strand, within BWI76_RS09610at 2011.456 kb on + strandat 2011.579 kb on + strandat 2011.612 kb on + strandat 2012.273 kb on + strand, within BWI76_RS09615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (N)
remove
2,010,314 - BWI76_RS09600 0.88 -0.1
2,010,584 + +0.2
2,010,592 - +1.6
2,010,832 + -0.2
2,011,146 - -2.3
2,011,165 + +0.7
2,011,267 - BWI76_RS09610 0.33 +0.3
2,011,337 - BWI76_RS09610 0.55 -0.6
2,011,456 + +0.1
2,011,579 + -0.2
2,011,612 + -0.3
2,012,273 + BWI76_RS09615 0.33 -1.3

Or see this region's nucleotide sequence