Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18475

Experiment: reconstituted MRS with Lacto-N-neotetraose 7.1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	reconstituted MRS with Lacto-N-neotetraose 7.1 mM
1,929,529	-		BBR_RS18470	0.65	-1.6
1,929,531	-		BBR_RS18470	0.65	+0.0
1,929,603	-		BBR_RS18470	0.70	-0.8
1,929,612	-		BBR_RS18470	0.70	+1.2
1,929,677	+		BBR_RS18470	0.75	-0.6
1,929,689	-		BBR_RS18470	0.76	-0.9
1,929,689	-		BBR_RS18470	0.76	+0.7
1,929,693	+		BBR_RS18470	0.76	-0.3
1,929,736	+		BBR_RS18470	0.79	-0.2
1,929,736	+		BBR_RS18470	0.79	-0.5
1,929,737	-		BBR_RS18470	0.79	-0.7
1,929,804	-		BBR_RS18470	0.83	-0.2
1,929,828	-		BBR_RS18470	0.85	-0.7
1,929,865	+		BBR_RS18470	0.88	+0.6
1,929,873	-		BBR_RS18470	0.88	+1.7
1,929,877	+		BBR_RS18470	0.88	+0.3
1,929,890	-		BBR_RS18470	0.89	-0.2
1,930,013	-				-0.1
1,930,018	-				+0.1
1,930,029	-				-0.6
1,930,099	+				-0.1
1,930,122	+				-0.7
1,930,128	-				-0.0
1,930,128	-				-0.3
1,930,128	-				-0.6
1,930,128	-				+0.4
1,930,128	-				-0.6
1,930,128	-				+0.2
1,930,197	+				+0.3
1,930,212	+				+0.1
1,930,219	-				-0.2
1,930,230	+				-0.1
1,930,266	+				-0.9
1,930,274	-				-0.6
1,930,388	+				-0.0
1,930,408	+				-0.9
1,930,408	+				-2.2
1,930,424	+				-3.0
1,930,482	+				-0.8
1,930,515	+				-2.9
1,930,515	+				-3.4
1,930,539	-				-3.5
1,930,576	+				-0.8
1,930,588	+				-3.8
1,930,604	-				-2.2
1,930,727	+				-1.6
1,930,732	+		BBR_RS18475	0.10	-1.4
1,930,732	+		BBR_RS18475	0.10	-1.3
1,930,735	-		BBR_RS18475	0.10	-2.7
1,930,740	-		BBR_RS18475	0.10	-3.0
1,930,740	-		BBR_RS18475	0.10	-1.8
1,930,740	-		BBR_RS18475	0.10	-1.3
1,930,740	-		BBR_RS18475	0.10	+0.5
1,930,742	+		BBR_RS18475	0.10	-2.2
1,930,742	-		BBR_RS18475	0.10	-0.7
1,930,750	-		BBR_RS18475	0.11	-2.2
1,930,750	-		BBR_RS18475	0.11	-2.5
1,930,774	+		BBR_RS18475	0.11	-3.5
1,930,782	-		BBR_RS18475	0.12	-0.5
1,930,803	+		BBR_RS18475	0.12	-4.4
1,930,809	+		BBR_RS18475	0.12	-2.1
1,930,810	+		BBR_RS18475	0.13	-2.2
1,930,817	-		BBR_RS18475	0.13	-2.2
1,930,878	+		BBR_RS18475	0.15	-2.6
1,930,878	+		BBR_RS18475	0.15	-2.0
1,930,878	+		BBR_RS18475	0.15	-2.9
1,930,880	+		BBR_RS18475	0.15	-4.8
1,930,924	+		BBR_RS18475	0.16	-1.5
1,930,944	+		BBR_RS18475	0.17	-1.4
1,930,950	+		BBR_RS18475	0.17	-1.4
1,930,950	+		BBR_RS18475	0.17	-2.3
1,930,983	+		BBR_RS18475	0.18	-2.0
1,930,985	+		BBR_RS18475	0.18	-3.7
1,930,985	+		BBR_RS18475	0.18	-2.3
1,930,985	+		BBR_RS18475	0.18	-2.1
1,930,985	+		BBR_RS18475	0.18	-2.6
1,930,985	+		BBR_RS18475	0.18	-1.3
1,930,993	-		BBR_RS18475	0.18	-0.3
1,931,026	+		BBR_RS18475	0.19	-1.0
1,931,086	-		BBR_RS18475	0.21	-2.6
1,931,086	-		BBR_RS18475	0.21	-1.2
1,931,115	+		BBR_RS18475	0.22	-2.9
1,931,123	+		BBR_RS18475	0.22	-2.6
1,931,123	+		BBR_RS18475	0.22	-2.3
1,931,171	-		BBR_RS18475	0.24	-1.5
1,931,179	+		BBR_RS18475	0.24	-1.1
1,931,217	+		BBR_RS18475	0.25	-3.3
1,931,266	-		BBR_RS18475	0.27	-3.2
1,931,280	+		BBR_RS18475	0.28	-1.6
1,931,280	+		BBR_RS18475	0.28	-2.8
1,931,288	-		BBR_RS18475	0.28	-3.5
1,931,288	-		BBR_RS18475	0.28	-1.2
1,931,288	-		BBR_RS18475	0.28	-2.6
1,931,290	+		BBR_RS18475	0.28	-2.9
1,931,300	+		BBR_RS18475	0.28	-1.9
1,931,305	+		BBR_RS18475	0.28	-3.4
1,931,313	+		BBR_RS18475	0.29	-1.0
1,931,315	+		BBR_RS18475	0.29	-2.0
1,931,318	+		BBR_RS18475	0.29	-3.6
1,931,321	-		BBR_RS18475	0.29	-3.5
1,931,334	+		BBR_RS18475	0.29	-2.4
1,931,353	+		BBR_RS18475	0.30	-2.1
1,931,353	+		BBR_RS18475	0.30	-1.8
1,931,361	-		BBR_RS18475	0.30	-2.8
1,931,363	+		BBR_RS18475	0.30	-1.6
1,931,379	+		BBR_RS18475	0.31	-1.3
1,931,381	+		BBR_RS18475	0.31	-1.2
1,931,381	+		BBR_RS18475	0.31	-1.3
1,931,385	-		BBR_RS18475	0.31	-2.2
1,931,387	-		BBR_RS18475	0.31	-2.4
1,931,389	-		BBR_RS18475	0.31	-1.5
1,931,391	+		BBR_RS18475	0.31	-1.1
1,931,393	+		BBR_RS18475	0.31	-2.6
1,931,393	+		BBR_RS18475	0.31	-3.6
1,931,401	-		BBR_RS18475	0.31	-0.8
1,931,401	-		BBR_RS18475	0.31	-1.9
1,931,411	-		BBR_RS18475	0.32	-2.0
1,931,449	-		BBR_RS18475	0.33	-2.3
1,931,457	-		BBR_RS18475	0.33	-0.6
1,931,475	-		BBR_RS18475	0.34	-3.4
1,931,538	-		BBR_RS18475	0.36	-1.1
1,931,568	+		BBR_RS18475	0.37	-2.5
1,931,607	+		BBR_RS18475	0.38	-1.6
1,931,607	-		BBR_RS18475	0.38	-1.4
1,931,623	+		BBR_RS18475	0.38	-2.6
1,931,625	-		BBR_RS18475	0.38	-1.3
1,931,633	+		BBR_RS18475	0.39	-1.7
1,931,633	+		BBR_RS18475	0.39	-1.3
1,931,641	+		BBR_RS18475	0.39	-1.9
1,931,641	-		BBR_RS18475	0.39	-1.0
1,931,651	+		BBR_RS18475	0.39	-1.5
1,931,651	+		BBR_RS18475	0.39	-1.4
1,931,651	+		BBR_RS18475	0.39	-2.7
1,931,651	+		BBR_RS18475	0.39	-0.2
1,931,659	-		BBR_RS18475	0.40	-2.0
1,931,683	-		BBR_RS18475	0.40	-2.4
1,931,700	+		BBR_RS18475	0.41	-1.5
1,931,716	+		BBR_RS18475	0.41	-1.4
1,931,726	+		BBR_RS18475	0.42	-2.6
1,931,734	-		BBR_RS18475	0.42	-3.5
1,931,734	-		BBR_RS18475	0.42	-1.9
1,931,805	-		BBR_RS18475	0.44	-2.5
1,931,839	-		BBR_RS18475	0.45	-1.9
1,931,881	+		BBR_RS18475	0.47	-1.8
1,931,883	+		BBR_RS18475	0.47	-1.4
1,931,883	+		BBR_RS18475	0.47	-1.4
1,931,883	+		BBR_RS18475	0.47	-1.6
1,931,883	+		BBR_RS18475	0.47	-1.3
1,931,889	+		BBR_RS18475	0.47	-0.8
1,931,891	-		BBR_RS18475	0.47	-1.2
1,931,897	-		BBR_RS18475	0.47	-3.1
1,931,897	-		BBR_RS18475	0.47	-2.1
1,931,912	+		BBR_RS18475	0.48	-2.3
1,931,912	+		BBR_RS18475	0.48	-1.9
1,931,912	+		BBR_RS18475	0.48	-2.3
1,931,912	+		BBR_RS18475	0.48	-2.8
1,931,916	-		BBR_RS18475	0.48	-1.6
1,931,916	-		BBR_RS18475	0.48	-1.7
1,931,920	-		BBR_RS18475	0.48	-0.9
1,931,937	+		BBR_RS18475	0.48	-0.6
1,931,947	-		BBR_RS18475	0.49	-2.2
1,931,968	+		BBR_RS18475	0.49	-1.6
1,932,008	-		BBR_RS18475	0.51	-1.4
1,932,026	+		BBR_RS18475	0.51	-2.7
1,932,026	+		BBR_RS18475	0.51	-1.6
1,932,034	-		BBR_RS18475	0.52	-2.6
1,932,064	+		BBR_RS18475	0.52	-1.6
1,932,069	+		BBR_RS18475	0.53	-3.0
1,932,096	+		BBR_RS18475	0.54	-1.5
1,932,141	+		BBR_RS18475	0.55	-2.0
1,932,160	-		BBR_RS18475	0.56	-0.6
1,932,160	-		BBR_RS18475	0.56	-1.3
1,932,165	+		BBR_RS18475	0.56	-2.9
1,932,188	+		BBR_RS18475	0.56	-1.6
1,932,220	+		BBR_RS18475	0.57	-2.6
1,932,333	+		BBR_RS18475	0.61	-1.8
1,932,336	+		BBR_RS18475	0.61	-1.8
1,932,336	+		BBR_RS18475	0.61	-1.5
1,932,336	+		BBR_RS18475	0.61	-2.4
1,932,341	-		BBR_RS18475	0.61	-1.0
1,932,354	-		BBR_RS18475	0.62	-2.5
1,932,371	-		BBR_RS18475	0.62	-2.5
1,932,421	-		BBR_RS18475	0.64	-1.1
1,932,483	+		BBR_RS18475	0.66	-1.1
1,932,497	+		BBR_RS18475	0.66	-2.1
1,932,497	+		BBR_RS18475	0.66	-1.5
1,932,498	-		BBR_RS18475	0.66	-1.7
1,932,504	-		BBR_RS18475	0.67	-2.3
1,932,504	-		BBR_RS18475	0.67	-2.0
1,932,533	-		BBR_RS18475	0.67	-2.0
1,932,535	+		BBR_RS18475	0.67	-2.4
1,932,565	-		BBR_RS18475	0.68	-1.7
1,932,620	+		BBR_RS18475	0.70	-3.1
1,932,648	+		BBR_RS18475	0.71	-0.4
1,932,649	+		BBR_RS18475	0.71	+0.2
1,932,701	+		BBR_RS18475	0.73	-2.0
1,932,703	-		BBR_RS18475	0.73	-1.9
1,932,709	-		BBR_RS18475	0.73	-3.7
1,932,773	-		BBR_RS18475	0.75	-3.4
1,932,874	-		BBR_RS18475	0.78	-2.6
1,932,879	-		BBR_RS18475	0.78	-2.1
1,932,879	-		BBR_RS18475	0.78	-1.8
1,932,879	-		BBR_RS18475	0.78	-2.2
1,932,884	-		BBR_RS18475	0.79	-3.1
1,932,921	-		BBR_RS18475	0.80	-1.0
1,932,921	-		BBR_RS18475	0.80	-2.4
1,932,929	+		BBR_RS18475	0.80	-1.3
1,932,963	-		BBR_RS18475	0.81	-1.4
1,933,005	+		BBR_RS18475	0.82	-1.1
1,933,005	+		BBR_RS18475	0.82	-1.7
1,933,005	+		BBR_RS18475	0.82	-1.0
1,933,013	-		BBR_RS18475	0.83	-2.5
1,933,045	-		BBR_RS18475	0.84	-1.6
1,933,068	+		BBR_RS18475	0.84	-0.5
1,933,076	-		BBR_RS18475	0.85	-2.2
1,933,140	+		BBR_RS18475	0.87	-2.8
1,933,154	+		BBR_RS18475	0.87	-2.7
1,933,154	+		BBR_RS18475	0.87	-3.0
1,933,154	+		BBR_RS18475	0.87	-1.9
1,933,154	+		BBR_RS18475	0.87	-1.1
1,933,154	+		BBR_RS18475	0.87	-1.3
1,933,154	+		BBR_RS18475	0.87	-2.4
1,933,156	+		BBR_RS18475	0.87	-1.1
1,933,159	+		BBR_RS18475	0.87	-2.4
1,933,162	-		BBR_RS18475	0.87	-1.5
1,933,209	-		BBR_RS18475	0.89	-2.5
1,933,214	+		BBR_RS18475	0.89	-1.7
1,933,214	+		BBR_RS18475	0.89	-3.1
1,933,214	+		BBR_RS18475	0.89	-1.0
1,933,214	+		BBR_RS18475	0.89	-2.2
1,933,214	+		BBR_RS18475	0.89	-2.1
1,933,214	+		BBR_RS18475	0.89	-1.8
1,933,222	-		BBR_RS18475	0.89	-1.2
1,933,222	-		BBR_RS18475	0.89	-2.2
1,933,222	-		BBR_RS18475	0.89	-0.7
1,933,222	-		BBR_RS18475	0.89	-1.5
1,933,226	+		BBR_RS18475	0.90	-2.4
1,933,237	-		BBR_RS18475	0.90	-2.8
1,933,242	-				-0.6
1,933,246	-				-1.9
1,933,296	-				-2.0
1,933,316	+				-0.2
1,933,364	+				-1.9
1,933,367	-				-2.4
1,933,376	-				-1.4
1,933,397	+				-3.0
1,933,397	+				-3.0
1,933,402	+				-2.1
1,933,452	-				-2.0
1,933,470	+				-2.5
1,933,470	+				-3.4
1,933,470	+				-1.6
1,933,480	-				-3.4
1,933,519	+				-2.7
1,933,551	-				-3.0
1,933,556	-				+0.3
1,933,556	-				+0.6
1,933,556	-				-0.2
1,933,556	-				+0.4
1,933,633	+				-0.1
1,933,677	-				+0.3
1,933,680	+				-0.4
1,933,682	+				-0.5
1,933,682	+				-0.4
1,933,683	-				+0.6
1,933,683	-				+0.1
1,933,728	+				+0.1
1,933,728	+				-0.6
1,933,728	+				-0.5
1,933,728	+				+0.0
1,933,733	+				+0.3
1,933,733	+				-0.2
1,933,736	-				+0.6
1,933,766	+				+0.7
1,933,774	+				-0.5
1,933,779	+				-0.9
1,933,798	+				-0.0
1,933,810	+				-0.7
1,933,818	-				+0.9
1,933,847	-				+0.2
1,933,847	-				-0.8
1,933,885	+		BBR_RS18480	0.13	+0.5
1,933,885	+		BBR_RS18480	0.13	-0.2
1,933,920	+		BBR_RS18480	0.16	+0.4
1,933,922	+		BBR_RS18480	0.17	+0.4
1,933,922	+		BBR_RS18480	0.17	+0.2
1,933,928	-		BBR_RS18480	0.17	+0.6
1,933,928	-		BBR_RS18480	0.17	-0.1
1,933,928	-		BBR_RS18480	0.17	-1.0
1,933,978	-		BBR_RS18480	0.22	-0.3
1,933,978	-		BBR_RS18480	0.22	+0.6
1,934,047	-		BBR_RS18480	0.29	-0.0
1,934,056	-		BBR_RS18480	0.30	+0.3
1,934,140	-		BBR_RS18480	0.38	-0.7
1,934,141	-		BBR_RS18480	0.38	+1.1
1,934,145	-		BBR_RS18480	0.39	-0.7
1,934,145	-		BBR_RS18480	0.39	+0.1
1,934,162	+		BBR_RS18480	0.40	+0.5
1,934,162	+		BBR_RS18480	0.40	+0.7
1,934,169	+		BBR_RS18480	0.41	+0.9
1,934,170	-		BBR_RS18480	0.41	-0.5
1,934,170	-		BBR_RS18480	0.41	+0.1
1,934,259	+		BBR_RS18480	0.50	+0.7
1,934,269	-		BBR_RS18480	0.51	+0.3
1,934,300	-		BBR_RS18480	0.54	+1.0
1,934,302	-		BBR_RS18480	0.54	+0.2
1,934,309	+		BBR_RS18480	0.55	-0.1
1,934,333	+		BBR_RS18480	0.57	-0.1
1,934,360	+		BBR_RS18480	0.60	-0.2
1,934,368	+		BBR_RS18480	0.61	+0.2
1,934,375	+		BBR_RS18480	0.61	-0.9
1,934,375	+		BBR_RS18480	0.61	-0.4
1,934,375	+		BBR_RS18480	0.61	+0.1
1,934,376	-		BBR_RS18480	0.62	+0.5
1,934,378	-		BBR_RS18480	0.62	-0.2
1,934,383	-		BBR_RS18480	0.62	-0.0
1,934,383	-		BBR_RS18480	0.62	+1.4
1,934,383	-		BBR_RS18480	0.62	-0.5
1,934,383	-		BBR_RS18480	0.62	-0.0
1,934,409	+		BBR_RS18480	0.65	+0.6
1,934,411	+		BBR_RS18480	0.65	-0.9
1,934,419	-		BBR_RS18480	0.66	-0.3
1,934,419	-		BBR_RS18480	0.66	+0.1
1,934,419	-		BBR_RS18480	0.66	-1.0
1,934,427	-		BBR_RS18480	0.67	-0.3
1,934,427	-		BBR_RS18480	0.67	-1.1
1,934,441	-		BBR_RS18480	0.68	-0.3
1,934,499	+		BBR_RS18480	0.74	-0.8
1,934,501	+		BBR_RS18480	0.74	-0.7
1,934,509	-		BBR_RS18480	0.75	+0.1
1,934,509	-		BBR_RS18480	0.75	-0.1
1,934,509	-		BBR_RS18480	0.75	+0.7
1,934,534	+		BBR_RS18480	0.77	+0.4
1,934,553	-		BBR_RS18480	0.79	+1.2