Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_4190 and Dshi_4191 are separated by 78 nucleotides Dshi_4191 and Dshi_4192 are separated by 92 nucleotides Dshi_4192 and Dshi_4193 overlap by 4 nucleotides
Dshi_4190: Dshi_4190 - hypothetical protein (RefSeq), at 35,941 to 37,218
_4190
Dshi_4191: Dshi_4191 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 37,297 to 38,292
_4191
Dshi_4192: Dshi_4192 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 38,385 to 38,972
_4192
Dshi_4193: Dshi_4193 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 38,969 to 40,258
_4193
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 36.378 kb on - strand, within Dshi_4190 at 37.013 kb on - strand, within Dshi_4190 at 37.115 kb on - strand at 37.157 kb on - strand at 37.218 kb on + strand at 37.574 kb on + strand, within Dshi_4191 at 37.676 kb on + strand, within Dshi_4191 at 37.782 kb on - strand, within Dshi_4191 at 37.898 kb on + strand, within Dshi_4191 at 38.008 kb on + strand, within Dshi_4191 at 38.041 kb on - strand, within Dshi_4191 at 38.059 kb on - strand, within Dshi_4191 at 38.066 kb on + strand, within Dshi_4191 at 38.401 kb on - strand at 38.849 kb on + strand, within Dshi_4192 at 38.849 kb on + strand, within Dshi_4192 at 38.857 kb on - strand, within Dshi_4192 at 38.898 kb on + strand, within Dshi_4192 at 39.196 kb on - strand, within Dshi_4193 at 39.257 kb on + strand, within Dshi_4193
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 2 mM remove 36,378 - Dshi_4190 0.34 -0.3 37,013 - Dshi_4190 0.84 -1.0 37,115 - +0.1 37,157 - -0.1 37,218 + +0.6 37,574 + Dshi_4191 0.28 -0.2 37,676 + Dshi_4191 0.38 -1.4 37,782 - Dshi_4191 0.49 -2.3 37,898 + Dshi_4191 0.60 +1.1 38,008 + Dshi_4191 0.71 +0.7 38,041 - Dshi_4191 0.75 +1.3 38,059 - Dshi_4191 0.77 +0.3 38,066 + Dshi_4191 0.77 -0.2 38,401 - +0.4 38,849 + Dshi_4192 0.79 -0.2 38,849 + Dshi_4192 0.79 +0.3 38,857 - Dshi_4192 0.80 -0.4 38,898 + Dshi_4192 0.87 -0.4 39,196 - Dshi_4193 0.18 -0.5 39,257 + Dshi_4193 0.22 -0.4
Or see this region's nucleotide sequence