Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0540

Experiment: m.b. 1-ethyl-3-methylimidazolium chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0539 and Dshi_0540 are separated by 77 nucleotidesDshi_0540 and Dshi_0541 are separated by 134 nucleotides Dshi_0539: Dshi_0539 - aldo/keto reductase (RefSeq), at 524,529 to 525,467 _0539 Dshi_0540: Dshi_0540 - NnrUfamily protein (RefSeq), at 525,545 to 526,321 _0540 Dshi_0541: Dshi_0541 - oxygen-independent coproporphyrinogen III oxidase (RefSeq), at 526,456 to 527,820 _0541 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1at 524.572 kb on + strandat 524.577 kb on + strandat 524.595 kb on - strandat 524.704 kb on + strand, within Dshi_0539at 524.723 kb on - strand, within Dshi_0539at 524.794 kb on + strand, within Dshi_0539at 524.915 kb on + strand, within Dshi_0539at 524.919 kb on - strand, within Dshi_0539at 524.922 kb on + strand, within Dshi_0539at 524.928 kb on + strand, within Dshi_0539at 524.983 kb on - strand, within Dshi_0539at 524.989 kb on + strand, within Dshi_0539at 525.016 kb on + strand, within Dshi_0539at 525.019 kb on - strand, within Dshi_0539at 525.024 kb on - strand, within Dshi_0539at 525.102 kb on - strand, within Dshi_0539at 525.171 kb on - strand, within Dshi_0539at 525.186 kb on + strand, within Dshi_0539at 525.194 kb on - strand, within Dshi_0539at 525.261 kb on + strand, within Dshi_0539at 525.318 kb on - strand, within Dshi_0539at 525.341 kb on + strand, within Dshi_0539at 525.358 kb on + strand, within Dshi_0539at 525.421 kb on - strandat 525.427 kb on + strandat 525.462 kb on + strandat 525.470 kb on - strandat 525.476 kb on + strandat 525.520 kb on - strandat 525.531 kb on + strandat 525.531 kb on + strandat 525.539 kb on + strandat 525.583 kb on + strandat 525.603 kb on + strandat 525.733 kb on + strand, within Dshi_0540at 525.780 kb on + strand, within Dshi_0540at 525.800 kb on + strand, within Dshi_0540at 525.805 kb on + strand, within Dshi_0540at 525.848 kb on + strand, within Dshi_0540at 525.867 kb on + strand, within Dshi_0540at 525.932 kb on - strand, within Dshi_0540at 525.985 kb on - strand, within Dshi_0540at 525.995 kb on - strand, within Dshi_0540at 526.003 kb on + strand, within Dshi_0540at 526.065 kb on - strand, within Dshi_0540at 526.115 kb on + strand, within Dshi_0540at 526.150 kb on + strand, within Dshi_0540at 526.235 kb on - strand, within Dshi_0540at 526.248 kb on + strandat 526.308 kb on + strandat 526.347 kb on + strandat 526.368 kb on + strandat 526.447 kb on - strandat 526.525 kb on - strandat 526.530 kb on - strandat 526.537 kb on - strandat 526.598 kb on + strand, within Dshi_0541at 526.667 kb on + strand, within Dshi_0541at 526.735 kb on + strand, within Dshi_0541at 526.779 kb on + strand, within Dshi_0541at 526.898 kb on + strand, within Dshi_0541at 526.964 kb on + strand, within Dshi_0541at 526.966 kb on - strand, within Dshi_0541at 527.085 kb on + strand, within Dshi_0541at 527.104 kb on - strand, within Dshi_0541at 527.121 kb on + strand, within Dshi_0541at 527.129 kb on - strand, within Dshi_0541at 527.131 kb on + strand, within Dshi_0541at 527.152 kb on + strand, within Dshi_0541at 527.191 kb on - strand, within Dshi_0541at 527.229 kb on + strand, within Dshi_0541at 527.265 kb on - strand, within Dshi_0541at 527.286 kb on + strand, within Dshi_0541

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 1-ethyl-3-methylimidazolium chloride 2 mM
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524,572 + +0.0
524,577 + -1.2
524,595 - -0.4
524,704 + Dshi_0539 0.19 +0.1
524,723 - Dshi_0539 0.21 -0.7
524,794 + Dshi_0539 0.28 -0.7
524,915 + Dshi_0539 0.41 +1.5
524,919 - Dshi_0539 0.42 -0.1
524,922 + Dshi_0539 0.42 -1.2
524,928 + Dshi_0539 0.42 +0.4
524,983 - Dshi_0539 0.48 +0.3
524,989 + Dshi_0539 0.49 -0.9
525,016 + Dshi_0539 0.52 +0.4
525,019 - Dshi_0539 0.52 -0.1
525,024 - Dshi_0539 0.53 +0.0
525,102 - Dshi_0539 0.61 -0.1
525,171 - Dshi_0539 0.68 +0.3
525,186 + Dshi_0539 0.70 -0.5
525,194 - Dshi_0539 0.71 -0.4
525,261 + Dshi_0539 0.78 -0.1
525,318 - Dshi_0539 0.84 -0.3
525,341 + Dshi_0539 0.86 +0.4
525,358 + Dshi_0539 0.88 +0.2
525,421 - +0.8
525,427 + +0.8
525,462 + -0.6
525,470 - +0.2
525,476 + -0.7
525,520 - -2.0
525,531 + +0.3
525,531 + -0.7
525,539 + -0.3
525,583 + -0.3
525,603 + -0.5
525,733 + Dshi_0540 0.24 +0.3
525,780 + Dshi_0540 0.30 -0.7
525,800 + Dshi_0540 0.33 -0.2
525,805 + Dshi_0540 0.33 -0.3
525,848 + Dshi_0540 0.39 -0.1
525,867 + Dshi_0540 0.41 +1.1
525,932 - Dshi_0540 0.50 +0.0
525,985 - Dshi_0540 0.57 -0.2
525,995 - Dshi_0540 0.58 -0.6
526,003 + Dshi_0540 0.59 -0.2
526,065 - Dshi_0540 0.67 -0.0
526,115 + Dshi_0540 0.73 +0.9
526,150 + Dshi_0540 0.78 -0.7
526,235 - Dshi_0540 0.89 -0.4
526,248 + +0.9
526,308 + -0.5
526,347 + +0.7
526,368 + -0.1
526,447 - +0.1
526,525 - -1.9
526,530 - +1.0
526,537 - -0.6
526,598 + Dshi_0541 0.10 -0.4
526,667 + Dshi_0541 0.15 -1.0
526,735 + Dshi_0541 0.20 -0.1
526,779 + Dshi_0541 0.24 -0.1
526,898 + Dshi_0541 0.32 -0.1
526,964 + Dshi_0541 0.37 -0.1
526,966 - Dshi_0541 0.37 +0.5
527,085 + Dshi_0541 0.46 +0.1
527,104 - Dshi_0541 0.47 -0.2
527,121 + Dshi_0541 0.49 +0.3
527,129 - Dshi_0541 0.49 -0.2
527,131 + Dshi_0541 0.49 +0.1
527,152 + Dshi_0541 0.51 -0.3
527,191 - Dshi_0541 0.54 +0.1
527,229 + Dshi_0541 0.57 +0.3
527,265 - Dshi_0541 0.59 -0.0
527,286 + Dshi_0541 0.61 -1.0

Or see this region's nucleotide sequence