Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_135

Experiment: sodium carbonate 0.0125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_134 and Pf6N2E2_135 are separated by 88 nucleotidesPf6N2E2_135 and Pf6N2E2_136 are separated by 162 nucleotides Pf6N2E2_134 - FIG00960493: hypothetical protein, at 182,193 to 183,569 _134 Pf6N2E2_135 - Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF, at 183,658 to 184,878 _135 Pf6N2E2_136 - Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE, at 185,041 to 186,099 _136 Position (kb) 183 184 185Strain fitness (log2 ratio) -1 0 1at 183.027 kb on + strand, within Pf6N2E2_134at 183.071 kb on - strand, within Pf6N2E2_134at 183.192 kb on - strand, within Pf6N2E2_134at 183.283 kb on + strand, within Pf6N2E2_134at 183.283 kb on + strand, within Pf6N2E2_134at 183.283 kb on + strand, within Pf6N2E2_134at 183.284 kb on - strand, within Pf6N2E2_134at 183.284 kb on - strand, within Pf6N2E2_134at 183.284 kb on - strand, within Pf6N2E2_134at 183.487 kb on + strandat 183.487 kb on + strandat 183.508 kb on + strandat 183.508 kb on + strandat 183.508 kb on + strandat 183.509 kb on - strandat 183.509 kb on - strandat 183.509 kb on - strandat 183.528 kb on - strandat 183.839 kb on + strand, within Pf6N2E2_135at 183.839 kb on + strand, within Pf6N2E2_135at 183.839 kb on + strand, within Pf6N2E2_135at 183.839 kb on + strand, within Pf6N2E2_135at 183.840 kb on - strand, within Pf6N2E2_135at 184.106 kb on + strand, within Pf6N2E2_135at 184.239 kb on - strand, within Pf6N2E2_135at 184.607 kb on + strand, within Pf6N2E2_135at 184.608 kb on - strand, within Pf6N2E2_135at 184.705 kb on + strand, within Pf6N2E2_135at 184.706 kb on - strand, within Pf6N2E2_135at 184.706 kb on - strand, within Pf6N2E2_135at 184.706 kb on - strand, within Pf6N2E2_135at 184.721 kb on + strand, within Pf6N2E2_135at 184.721 kb on + strand, within Pf6N2E2_135at 184.722 kb on - strand, within Pf6N2E2_135at 184.722 kb on - strand, within Pf6N2E2_135at 184.722 kb on - strand, within Pf6N2E2_135at 184.722 kb on - strand, within Pf6N2E2_135at 184.722 kb on - strand, within Pf6N2E2_135at 184.767 kb on - strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.878 kb on + strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.879 kb on - strandat 184.882 kb on + strandat 184.882 kb on + strandat 184.882 kb on + strandat 184.883 kb on - strandat 184.883 kb on - strandat 184.883 kb on - strandat 184.893 kb on - strandat 185.042 kb on + strandat 185.043 kb on - strandat 185.054 kb on + strandat 185.055 kb on - strandat 185.114 kb on + strandat 185.376 kb on - strand, within Pf6N2E2_136at 185.557 kb on - strand, within Pf6N2E2_136at 185.557 kb on - strand, within Pf6N2E2_136

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium carbonate 0.0125 M
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183,027 + Pf6N2E2_134 0.61 -0.4
183,071 - Pf6N2E2_134 0.64 -0.2
183,192 - Pf6N2E2_134 0.73 +0.6
183,283 + Pf6N2E2_134 0.79 +0.3
183,283 + Pf6N2E2_134 0.79 -0.6
183,283 + Pf6N2E2_134 0.79 -0.6
183,284 - Pf6N2E2_134 0.79 +1.6
183,284 - Pf6N2E2_134 0.79 +1.1
183,284 - Pf6N2E2_134 0.79 +1.3
183,487 + -0.2
183,487 + -0.7
183,508 + +0.2
183,508 + +0.5
183,508 + +1.1
183,509 - -0.2
183,509 - +0.0
183,509 - +0.4
183,528 - +0.1
183,839 + Pf6N2E2_135 0.15 -0.3
183,839 + Pf6N2E2_135 0.15 -0.1
183,839 + Pf6N2E2_135 0.15 +0.7
183,839 + Pf6N2E2_135 0.15 +0.4
183,840 - Pf6N2E2_135 0.15 -0.8
184,106 + Pf6N2E2_135 0.37 +1.0
184,239 - Pf6N2E2_135 0.48 +0.7
184,607 + Pf6N2E2_135 0.78 +0.6
184,608 - Pf6N2E2_135 0.78 +0.2
184,705 + Pf6N2E2_135 0.86 -1.6
184,706 - Pf6N2E2_135 0.86 +0.3
184,706 - Pf6N2E2_135 0.86 -1.3
184,706 - Pf6N2E2_135 0.86 +0.0
184,721 + Pf6N2E2_135 0.87 -0.4
184,721 + Pf6N2E2_135 0.87 +1.0
184,722 - Pf6N2E2_135 0.87 +1.3
184,722 - Pf6N2E2_135 0.87 +1.3
184,722 - Pf6N2E2_135 0.87 +0.1
184,722 - Pf6N2E2_135 0.87 +0.4
184,722 - Pf6N2E2_135 0.87 +0.8
184,767 - -0.1
184,878 + -0.8
184,878 + -0.2
184,878 + +0.7
184,878 + +0.3
184,878 + -0.1
184,878 + -1.3
184,878 + -0.4
184,878 + +0.7
184,878 + -0.4
184,879 - +1.3
184,879 - +0.9
184,879 - -0.3
184,879 - -0.3
184,879 - -0.5
184,879 - -0.1
184,879 - +0.7
184,879 - +1.5
184,879 - +0.6
184,882 + -0.4
184,882 + -0.2
184,882 + -0.3
184,883 - +0.3
184,883 - -0.2
184,883 - +0.1
184,893 - -1.5
185,042 + -0.4
185,043 - -1.2
185,054 + -1.1
185,055 - +1.3
185,114 + -0.4
185,376 - Pf6N2E2_136 0.32 -0.3
185,557 - Pf6N2E2_136 0.49 +1.2
185,557 - Pf6N2E2_136 0.49 +0.2

Or see this region's nucleotide sequence