Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06347

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06346 and H281DRAFT_06347 are separated by 35 nucleotidesH281DRAFT_06347 and H281DRAFT_06348 are separated by 349 nucleotides H281DRAFT_06346: H281DRAFT_06346 - Predicted deacylase, at 20,536 to 21,525 _06346 H281DRAFT_06347: H281DRAFT_06347 - hypothetical protein, at 21,561 to 21,905 _06347 H281DRAFT_06348: H281DRAFT_06348 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 22,255 to 23,613 _06348 Position (kb) 21 22Strain fitness (log2 ratio) -1 0 1at 20.614 kb on + strandat 20.614 kb on + strandat 20.615 kb on - strandat 20.615 kb on - strandat 20.891 kb on + strand, within H281DRAFT_06346at 21.334 kb on + strand, within H281DRAFT_06346at 21.334 kb on + strand, within H281DRAFT_06346at 21.541 kb on + strandat 21.541 kb on + strandat 21.545 kb on + strandat 21.545 kb on + strandat 21.545 kb on + strandat 21.545 kb on + strandat 21.545 kb on + strandat 21.545 kb on + strandat 21.703 kb on + strand, within H281DRAFT_06347at 21.786 kb on - strand, within H281DRAFT_06347at 21.891 kb on + strandat 21.891 kb on + strandat 21.892 kb on - strandat 21.892 kb on - strandat 21.892 kb on - strandat 22.046 kb on + strandat 22.050 kb on + strandat 22.050 kb on + strandat 22.050 kb on + strandat 22.050 kb on + strandat 22.051 kb on - strandat 22.086 kb on + strandat 22.132 kb on - strandat 22.403 kb on + strandat 22.868 kb on - strand, within H281DRAFT_06348

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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20,614 + +0.5
20,614 + +0.3
20,615 - -0.2
20,615 - +0.1
20,891 + H281DRAFT_06346 0.36 +0.5
21,334 + H281DRAFT_06346 0.81 +0.5
21,334 + H281DRAFT_06346 0.81 +0.7
21,541 + -1.2
21,541 + +0.1
21,545 + +0.8
21,545 + +1.0
21,545 + +0.0
21,545 + +0.6
21,545 + +0.2
21,545 + -0.6
21,703 + H281DRAFT_06347 0.41 -1.4
21,786 - H281DRAFT_06347 0.65 -0.8
21,891 + -0.5
21,891 + -0.3
21,892 - +0.2
21,892 - -0.0
21,892 - -0.5
22,046 + -0.4
22,050 + +1.1
22,050 + +0.2
22,050 + -0.1
22,050 + +0.6
22,051 - +0.5
22,086 + -0.5
22,132 - +0.9
22,403 + -0.9
22,868 - H281DRAFT_06348 0.45 +0.2

Or see this region's nucleotide sequence