Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05232

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05231 and H281DRAFT_05232 are separated by 902 nucleotidesH281DRAFT_05232 and H281DRAFT_05233 are separated by 123 nucleotides H281DRAFT_05231: H281DRAFT_05231 - 2-keto-4-pentenoate hydratase, at 195,177 to 195,938 _05231 H281DRAFT_05232: H281DRAFT_05232 - putative serine protein kinase, PrkA, at 196,841 to 198,763 _05232 H281DRAFT_05233: H281DRAFT_05233 - hypothetical protein, at 198,887 to 200,158 _05233 Position (kb) 196 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 195.852 kb on + strand, within H281DRAFT_05231at 195.852 kb on + strand, within H281DRAFT_05231at 195.853 kb on - strand, within H281DRAFT_05231at 195.978 kb on + strandat 195.996 kb on + strandat 196.069 kb on + strandat 196.089 kb on + strandat 196.209 kb on + strandat 196.350 kb on - strandat 196.350 kb on - strandat 196.350 kb on - strandat 196.350 kb on - strandat 196.398 kb on + strandat 196.398 kb on + strandat 196.464 kb on - strandat 196.464 kb on - strandat 196.464 kb on - strandat 196.464 kb on - strandat 196.482 kb on + strandat 196.482 kb on + strandat 196.666 kb on + strandat 196.667 kb on - strandat 196.667 kb on - strandat 196.734 kb on + strandat 196.734 kb on + strandat 196.837 kb on + strandat 196.837 kb on + strandat 196.847 kb on - strandat 196.850 kb on + strandat 196.851 kb on - strandat 196.911 kb on - strandat 197.329 kb on - strand, within H281DRAFT_05232at 197.404 kb on + strand, within H281DRAFT_05232at 197.538 kb on - strand, within H281DRAFT_05232at 197.561 kb on + strandat 197.819 kb on + strand, within H281DRAFT_05232at 197.852 kb on + strand, within H281DRAFT_05232at 197.852 kb on + strand, within H281DRAFT_05232at 197.892 kb on + strand, within H281DRAFT_05232at 197.990 kb on + strand, within H281DRAFT_05232at 197.990 kb on + strand, within H281DRAFT_05232at 197.990 kb on + strand, within H281DRAFT_05232at 198.227 kb on + strand, within H281DRAFT_05232at 198.228 kb on - strand, within H281DRAFT_05232at 198.312 kb on - strand, within H281DRAFT_05232at 198.344 kb on + strand, within H281DRAFT_05232at 198.353 kb on + strand, within H281DRAFT_05232at 198.353 kb on + strand, within H281DRAFT_05232at 198.353 kb on + strand, within H281DRAFT_05232at 198.354 kb on - strand, within H281DRAFT_05232at 198.557 kb on + strand, within H281DRAFT_05232at 198.832 kb on + strandat 198.832 kb on + strandat 198.832 kb on + strandat 198.852 kb on + strandat 198.853 kb on - strandat 198.974 kb on + strandat 198.974 kb on + strandat 198.975 kb on - strandat 198.975 kb on - strandat 199.026 kb on + strand, within H281DRAFT_05233at 199.026 kb on + strand, within H281DRAFT_05233at 199.027 kb on - strand, within H281DRAFT_05233at 199.045 kb on + strand, within H281DRAFT_05233at 199.046 kb on - strand, within H281DRAFT_05233at 199.133 kb on + strand, within H281DRAFT_05233at 199.372 kb on + strand, within H281DRAFT_05233at 199.733 kb on + strand, within H281DRAFT_05233

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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195,852 + H281DRAFT_05231 0.89 +0.9
195,852 + H281DRAFT_05231 0.89 +0.3
195,853 - H281DRAFT_05231 0.89 +0.6
195,978 + +0.3
195,996 + +0.3
196,069 + +0.9
196,089 + +0.5
196,209 + +0.5
196,350 - +0.0
196,350 - -0.5
196,350 - +0.4
196,350 - +0.0
196,398 + +0.3
196,398 + +0.3
196,464 - -0.3
196,464 - -0.3
196,464 - -0.2
196,464 - +0.1
196,482 + +0.4
196,482 + +0.8
196,666 + +0.3
196,667 - -0.9
196,667 - -0.7
196,734 + -0.1
196,734 + -0.7
196,837 + -1.2
196,837 + +0.3
196,847 - -1.6
196,850 + -0.2
196,851 - -1.7
196,911 - +0.1
197,329 - H281DRAFT_05232 0.25 -0.3
197,404 + H281DRAFT_05232 0.29 -2.0
197,538 - H281DRAFT_05232 0.36 -0.5
197,561 + +0.2
197,819 + H281DRAFT_05232 0.51 -1.5
197,852 + H281DRAFT_05232 0.53 -0.4
197,852 + H281DRAFT_05232 0.53 -1.5
197,892 + H281DRAFT_05232 0.55 -0.0
197,990 + H281DRAFT_05232 0.60 -2.4
197,990 + H281DRAFT_05232 0.60 -0.8
197,990 + H281DRAFT_05232 0.60 -2.0
198,227 + H281DRAFT_05232 0.72 -1.0
198,228 - H281DRAFT_05232 0.72 -1.4
198,312 - H281DRAFT_05232 0.76 -0.5
198,344 + H281DRAFT_05232 0.78 -1.5
198,353 + H281DRAFT_05232 0.79 -1.2
198,353 + H281DRAFT_05232 0.79 -1.6
198,353 + H281DRAFT_05232 0.79 -1.3
198,354 - H281DRAFT_05232 0.79 -0.7
198,557 + H281DRAFT_05232 0.89 +0.7
198,832 + -1.0
198,832 + -1.5
198,832 + -0.8
198,852 + -0.5
198,853 - -1.3
198,974 + -2.2
198,974 + -1.6
198,975 - -0.5
198,975 - -1.6
199,026 + H281DRAFT_05233 0.11 -2.1
199,026 + H281DRAFT_05233 0.11 -0.6
199,027 - H281DRAFT_05233 0.11 -0.3
199,045 + H281DRAFT_05233 0.12 -0.3
199,046 - H281DRAFT_05233 0.12 -0.3
199,133 + H281DRAFT_05233 0.19 -0.7
199,372 + H281DRAFT_05233 0.38 -1.5
199,733 + H281DRAFT_05233 0.67 -0.9

Or see this region's nucleotide sequence