Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05162

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05160 and H281DRAFT_05161 overlap by 4 nucleotidesH281DRAFT_05161 and H281DRAFT_05162 are separated by 368 nucleotidesH281DRAFT_05162 and H281DRAFT_05163 are separated by 184 nucleotides H281DRAFT_05160: H281DRAFT_05160 - allantoicase, at 113,631 to 114,644 _05160 H281DRAFT_05161: H281DRAFT_05161 - ureidoglycolate lyase, at 114,641 to 115,153 _05161 H281DRAFT_05162: H281DRAFT_05162 - Uncharacterized membrane protein, at 115,522 to 116,715 _05162 H281DRAFT_05163: H281DRAFT_05163 - 5-hydroxyisourate hydrolase, at 116,900 to 117,253 _05163 Position (kb) 115 116 117Strain fitness (log2 ratio) -1 0 1at 114.535 kb on - strand, within H281DRAFT_05160at 115.275 kb on - strandat 115.275 kb on - strandat 115.280 kb on + strandat 115.426 kb on + strandat 115.427 kb on - strandat 115.492 kb on - strandat 115.631 kb on + strandat 115.632 kb on - strandat 115.668 kb on + strand, within H281DRAFT_05162at 115.669 kb on - strand, within H281DRAFT_05162at 115.871 kb on + strand, within H281DRAFT_05162at 115.871 kb on + strand, within H281DRAFT_05162at 115.872 kb on - strand, within H281DRAFT_05162at 115.961 kb on + strand, within H281DRAFT_05162at 115.962 kb on - strand, within H281DRAFT_05162at 115.973 kb on + strand, within H281DRAFT_05162at 115.974 kb on - strand, within H281DRAFT_05162at 115.974 kb on - strand, within H281DRAFT_05162at 116.027 kb on + strand, within H281DRAFT_05162at 116.066 kb on + strand, within H281DRAFT_05162at 116.187 kb on - strand, within H281DRAFT_05162at 116.263 kb on + strand, within H281DRAFT_05162at 116.263 kb on + strand, within H281DRAFT_05162at 116.264 kb on - strand, within H281DRAFT_05162at 116.303 kb on + strand, within H281DRAFT_05162at 116.391 kb on - strand, within H281DRAFT_05162at 116.510 kb on + strand, within H281DRAFT_05162at 116.511 kb on - strand, within H281DRAFT_05162at 116.511 kb on - strand, within H281DRAFT_05162at 116.511 kb on - strand, within H281DRAFT_05162at 116.525 kb on + strand, within H281DRAFT_05162at 116.543 kb on - strand, within H281DRAFT_05162at 116.628 kb on - strandat 117.305 kb on + strandat 117.342 kb on - strandat 117.387 kb on - strandat 117.387 kb on - strandat 117.387 kb on - strandat 117.429 kb on + strandat 117.430 kb on - strandat 117.430 kb on - strandat 117.497 kb on + strandat 117.497 kb on + strandat 117.539 kb on + strandat 117.539 kb on + strandat 117.539 kb on + strandat 117.540 kb on - strandat 117.680 kb on + strandat 117.680 kb on + strandat 117.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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114,535 - H281DRAFT_05160 0.89 +0.5
115,275 - -0.2
115,275 - +0.0
115,280 + +0.4
115,426 + +0.5
115,427 - +0.4
115,492 - +0.4
115,631 + -0.4
115,632 - +0.3
115,668 + H281DRAFT_05162 0.12 -0.5
115,669 - H281DRAFT_05162 0.12 -1.3
115,871 + H281DRAFT_05162 0.29 -1.2
115,871 + H281DRAFT_05162 0.29 +0.1
115,872 - H281DRAFT_05162 0.29 -0.8
115,961 + H281DRAFT_05162 0.37 -1.4
115,962 - H281DRAFT_05162 0.37 -0.0
115,973 + H281DRAFT_05162 0.38 -0.0
115,974 - H281DRAFT_05162 0.38 -0.1
115,974 - H281DRAFT_05162 0.38 -0.2
116,027 + H281DRAFT_05162 0.42 -0.3
116,066 + H281DRAFT_05162 0.46 -1.3
116,187 - H281DRAFT_05162 0.56 -1.3
116,263 + H281DRAFT_05162 0.62 -0.6
116,263 + H281DRAFT_05162 0.62 -0.9
116,264 - H281DRAFT_05162 0.62 +0.4
116,303 + H281DRAFT_05162 0.65 +0.1
116,391 - H281DRAFT_05162 0.73 -0.1
116,510 + H281DRAFT_05162 0.83 +0.3
116,511 - H281DRAFT_05162 0.83 +0.1
116,511 - H281DRAFT_05162 0.83 -0.5
116,511 - H281DRAFT_05162 0.83 -0.3
116,525 + H281DRAFT_05162 0.84 -0.4
116,543 - H281DRAFT_05162 0.86 -0.3
116,628 - -0.3
117,305 + -0.8
117,342 - +0.9
117,387 - -0.4
117,387 - +0.1
117,387 - +0.3
117,429 + +0.3
117,430 - -0.5
117,430 - -0.2
117,497 + +0.1
117,497 + +0.1
117,539 + -0.9
117,539 + -0.1
117,539 + +0.2
117,540 - -0.0
117,680 + -1.0
117,680 + +0.1
117,681 - -0.8

Or see this region's nucleotide sequence