Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04949 and H281DRAFT_04950 are separated by 285 nucleotides H281DRAFT_04950 and H281DRAFT_04951 are separated by 60 nucleotides H281DRAFT_04951 and H281DRAFT_04952 overlap by 4 nucleotides H281DRAFT_04952 and H281DRAFT_04953 are separated by 137 nucleotides
H281DRAFT_04949: H281DRAFT_04949 - putative spermidine/putrescine transport system permease protein, at 133,872 to 134,699
_04949
H281DRAFT_04950: H281DRAFT_04950 - tRNA_Ser_GGA, at 134,985 to 135,075
_04950
H281DRAFT_04951: H281DRAFT_04951 - cation/acetate symporter, at 135,136 to 137,154
_04951
H281DRAFT_04952: H281DRAFT_04952 - putative solute:sodium symporter small subunit, at 137,151 to 137,585
_04952
H281DRAFT_04953: H281DRAFT_04953 - acetyl-coenzyme A synthetase, at 137,723 to 139,705
_04953
Position (kb) 135
136
137
138 Strain fitness (log2 ratio) -1
0
1 at 134.648 kb on + strand at 134.651 kb on + strand at 134.652 kb on - strand at 134.652 kb on - strand at 134.652 kb on - strand at 134.682 kb on - strand at 134.682 kb on - strand at 134.706 kb on - strand at 134.706 kb on - strand at 134.706 kb on - strand at 134.724 kb on + strand at 134.724 kb on + strand at 134.918 kb on - strand at 134.918 kb on - strand at 135.138 kb on - strand at 135.152 kb on + strand at 135.152 kb on + strand at 135.152 kb on + strand at 135.153 kb on - strand at 135.171 kb on + strand at 135.172 kb on - strand at 135.172 kb on - strand at 135.203 kb on - strand at 135.329 kb on + strand at 135.332 kb on + strand at 135.332 kb on + strand at 135.332 kb on + strand at 135.332 kb on + strand at 135.497 kb on + strand, within H281DRAFT_04951 at 135.497 kb on + strand, within H281DRAFT_04951 at 135.585 kb on - strand, within H281DRAFT_04951 at 135.585 kb on - strand, within H281DRAFT_04951 at 135.585 kb on - strand, within H281DRAFT_04951 at 135.587 kb on + strand, within H281DRAFT_04951 at 135.587 kb on + strand, within H281DRAFT_04951 at 135.587 kb on + strand, within H281DRAFT_04951 at 135.587 kb on + strand, within H281DRAFT_04951 at 135.918 kb on - strand, within H281DRAFT_04951 at 135.989 kb on + strand, within H281DRAFT_04951 at 135.989 kb on + strand, within H281DRAFT_04951 at 135.989 kb on + strand, within H281DRAFT_04951 at 135.989 kb on + strand, within H281DRAFT_04951 at 135.990 kb on - strand, within H281DRAFT_04951 at 136.002 kb on + strand, within H281DRAFT_04951 at 136.039 kb on + strand, within H281DRAFT_04951 at 136.040 kb on - strand, within H281DRAFT_04951 at 136.411 kb on - strand, within H281DRAFT_04951 at 136.431 kb on - strand, within H281DRAFT_04951 at 136.514 kb on + strand, within H281DRAFT_04951 at 136.515 kb on - strand, within H281DRAFT_04951 at 136.758 kb on - strand, within H281DRAFT_04951 at 136.859 kb on + strand, within H281DRAFT_04951 at 136.859 kb on + strand, within H281DRAFT_04951 at 136.859 kb on + strand, within H281DRAFT_04951 at 136.860 kb on - strand, within H281DRAFT_04951 at 136.860 kb on - strand, within H281DRAFT_04951 at 136.958 kb on + strand at 136.959 kb on - strand at 137.087 kb on + strand at 137.087 kb on + strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.088 kb on - strand at 137.123 kb on + strand at 137.314 kb on + strand, within H281DRAFT_04952 at 137.315 kb on - strand, within H281DRAFT_04952 at 137.315 kb on - strand, within H281DRAFT_04952 at 137.315 kb on - strand, within H281DRAFT_04952 at 137.315 kb on - strand, within H281DRAFT_04952 at 137.315 kb on - strand, within H281DRAFT_04952 at 137.336 kb on - strand, within H281DRAFT_04952 at 137.336 kb on - strand, within H281DRAFT_04952 at 137.492 kb on - strand, within H281DRAFT_04952 at 137.592 kb on - strand at 137.592 kb on - strand at 137.596 kb on - strand at 137.596 kb on - strand at 137.596 kb on - strand at 137.698 kb on + strand at 137.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 134,648 + -0.3 134,651 + +0.0 134,652 - -0.2 134,652 - +0.1 134,652 - +0.5 134,682 - -0.1 134,682 - +0.6 134,706 - +0.2 134,706 - -0.1 134,706 - -0.6 134,724 + -0.8 134,724 + -0.1 134,918 - +0.0 134,918 - -0.6 135,138 - +0.1 135,152 + +0.3 135,152 + +1.1 135,152 + -0.6 135,153 - -0.5 135,171 + -0.4 135,172 - -0.3 135,172 - +0.2 135,203 - -0.3 135,329 + +0.5 135,332 + +0.5 135,332 + +0.5 135,332 + -0.3 135,332 + +0.9 135,497 + H281DRAFT_04951 0.18 +0.3 135,497 + H281DRAFT_04951 0.18 +1.0 135,585 - H281DRAFT_04951 0.22 +0.1 135,585 - H281DRAFT_04951 0.22 +0.4 135,585 - H281DRAFT_04951 0.22 +0.4 135,587 + H281DRAFT_04951 0.22 -0.0 135,587 + H281DRAFT_04951 0.22 +0.8 135,587 + H281DRAFT_04951 0.22 +0.1 135,587 + H281DRAFT_04951 0.22 +0.3 135,918 - H281DRAFT_04951 0.39 +0.8 135,989 + H281DRAFT_04951 0.42 -0.7 135,989 + H281DRAFT_04951 0.42 +0.2 135,989 + H281DRAFT_04951 0.42 +0.4 135,989 + H281DRAFT_04951 0.42 +1.0 135,990 - H281DRAFT_04951 0.42 +0.4 136,002 + H281DRAFT_04951 0.43 -0.2 136,039 + H281DRAFT_04951 0.45 +0.4 136,040 - H281DRAFT_04951 0.45 +0.7 136,411 - H281DRAFT_04951 0.63 +0.8 136,431 - H281DRAFT_04951 0.64 +0.9 136,514 + H281DRAFT_04951 0.68 +0.8 136,515 - H281DRAFT_04951 0.68 -0.0 136,758 - H281DRAFT_04951 0.80 -0.0 136,859 + H281DRAFT_04951 0.85 +0.2 136,859 + H281DRAFT_04951 0.85 +0.2 136,859 + H281DRAFT_04951 0.85 +0.5 136,860 - H281DRAFT_04951 0.85 -0.1 136,860 - H281DRAFT_04951 0.85 +0.6 136,958 + -0.0 136,959 - +0.4 137,087 + -0.5 137,087 + +0.9 137,088 - +0.3 137,088 - -0.4 137,088 - +0.1 137,088 - +0.1 137,123 + -0.4 137,314 + H281DRAFT_04952 0.37 +0.4 137,315 - H281DRAFT_04952 0.38 +0.3 137,315 - H281DRAFT_04952 0.38 +0.6 137,315 - H281DRAFT_04952 0.38 +0.2 137,315 - H281DRAFT_04952 0.38 +0.8 137,315 - H281DRAFT_04952 0.38 +0.3 137,336 - H281DRAFT_04952 0.43 +0.1 137,336 - H281DRAFT_04952 0.43 +0.8 137,492 - H281DRAFT_04952 0.78 +0.0 137,592 - +0.2 137,592 - -0.3 137,596 - -0.5 137,596 - +0.1 137,596 - +0.4 137,698 + +0.8 137,699 - -1.0
Or see this region's nucleotide sequence