Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04043

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04042 and H281DRAFT_04043 are separated by 77 nucleotidesH281DRAFT_04043 and H281DRAFT_04044 are separated by 56 nucleotidesH281DRAFT_04044 and H281DRAFT_04045 overlap by 1 nucleotides H281DRAFT_04042: H281DRAFT_04042 - phenylacetate transporter (from data), at 141,182 to 142,702 _04042 H281DRAFT_04043: H281DRAFT_04043 - Pimeloyl-ACP methyl ester carboxylesterase, at 142,780 to 143,745 _04043 H281DRAFT_04044: H281DRAFT_04044 - D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55, at 143,802 to 144,635 _04044 H281DRAFT_04045: H281DRAFT_04045 - L-aminopeptidase DmpA. Serine peptidase. MEROPS family S58, at 144,635 to 145,747 _04045 Position (kb) 142 143 144Strain fitness (log2 ratio) -2 -1 0 1 2at 141.824 kb on - strand, within H281DRAFT_04042at 142.126 kb on - strand, within H281DRAFT_04042at 142.213 kb on - strand, within H281DRAFT_04042at 142.221 kb on + strand, within H281DRAFT_04042at 142.221 kb on + strand, within H281DRAFT_04042at 142.221 kb on + strand, within H281DRAFT_04042at 142.222 kb on - strand, within H281DRAFT_04042at 142.222 kb on - strand, within H281DRAFT_04042at 142.222 kb on - strand, within H281DRAFT_04042at 142.222 kb on - strand, within H281DRAFT_04042at 142.222 kb on - strand, within H281DRAFT_04042at 142.264 kb on - strand, within H281DRAFT_04042at 142.264 kb on - strand, within H281DRAFT_04042at 142.276 kb on - strand, within H281DRAFT_04042at 142.314 kb on + strand, within H281DRAFT_04042at 142.315 kb on - strand, within H281DRAFT_04042at 142.315 kb on - strand, within H281DRAFT_04042at 142.320 kb on + strand, within H281DRAFT_04042at 142.553 kb on + strandat 142.554 kb on - strandat 142.582 kb on + strandat 142.583 kb on - strandat 142.583 kb on - strandat 142.586 kb on + strandat 142.663 kb on - strandat 142.663 kb on - strandat 142.739 kb on + strandat 142.739 kb on + strandat 142.739 kb on + strandat 142.740 kb on - strandat 142.740 kb on - strandat 142.740 kb on - strandat 142.740 kb on - strandat 142.974 kb on + strand, within H281DRAFT_04043at 142.974 kb on + strand, within H281DRAFT_04043at 142.974 kb on + strand, within H281DRAFT_04043at 142.974 kb on + strand, within H281DRAFT_04043at 142.975 kb on - strand, within H281DRAFT_04043at 142.975 kb on - strandat 142.975 kb on - strand, within H281DRAFT_04043at 142.975 kb on - strand, within H281DRAFT_04043at 142.975 kb on - strand, within H281DRAFT_04043at 143.007 kb on + strand, within H281DRAFT_04043at 143.308 kb on + strand, within H281DRAFT_04043at 143.309 kb on - strand, within H281DRAFT_04043at 143.309 kb on - strand, within H281DRAFT_04043at 143.433 kb on + strandat 143.437 kb on + strand, within H281DRAFT_04043at 143.502 kb on - strand, within H281DRAFT_04043at 143.569 kb on + strand, within H281DRAFT_04043at 143.709 kb on - strandat 143.746 kb on + strandat 143.746 kb on + strandat 143.746 kb on + strandat 143.747 kb on - strandat 144.203 kb on - strand, within H281DRAFT_04044at 144.290 kb on + strand, within H281DRAFT_04044at 144.290 kb on + strand, within H281DRAFT_04044at 144.290 kb on + strand, within H281DRAFT_04044at 144.358 kb on + strand, within H281DRAFT_04044at 144.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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141,824 - H281DRAFT_04042 0.42 +0.8
142,126 - H281DRAFT_04042 0.62 +0.3
142,213 - H281DRAFT_04042 0.68 +0.3
142,221 + H281DRAFT_04042 0.68 -0.3
142,221 + H281DRAFT_04042 0.68 +0.0
142,221 + H281DRAFT_04042 0.68 -0.7
142,222 - H281DRAFT_04042 0.68 +0.1
142,222 - H281DRAFT_04042 0.68 +0.4
142,222 - H281DRAFT_04042 0.68 +0.2
142,222 - H281DRAFT_04042 0.68 -0.0
142,222 - H281DRAFT_04042 0.68 +0.2
142,264 - H281DRAFT_04042 0.71 +0.5
142,264 - H281DRAFT_04042 0.71 -0.9
142,276 - H281DRAFT_04042 0.72 +0.3
142,314 + H281DRAFT_04042 0.74 -0.3
142,315 - H281DRAFT_04042 0.74 +0.1
142,315 - H281DRAFT_04042 0.74 +0.6
142,320 + H281DRAFT_04042 0.75 -0.4
142,553 + +0.7
142,554 - -0.1
142,582 + -2.1
142,583 - +1.2
142,583 - -0.3
142,586 + +1.0
142,663 - +0.5
142,663 - -0.1
142,739 + +0.3
142,739 + -0.1
142,739 + -1.7
142,740 - +1.8
142,740 - +0.3
142,740 - +2.1
142,740 - +0.0
142,974 + H281DRAFT_04043 0.20 +0.1
142,974 + H281DRAFT_04043 0.20 -0.3
142,974 + H281DRAFT_04043 0.20 +0.2
142,974 + H281DRAFT_04043 0.20 -0.0
142,975 - H281DRAFT_04043 0.20 -0.7
142,975 - +1.6
142,975 - H281DRAFT_04043 0.20 +0.1
142,975 - H281DRAFT_04043 0.20 +0.2
142,975 - H281DRAFT_04043 0.20 +0.1
143,007 + H281DRAFT_04043 0.23 -0.1
143,308 + H281DRAFT_04043 0.55 +0.7
143,309 - H281DRAFT_04043 0.55 -0.4
143,309 - H281DRAFT_04043 0.55 -0.7
143,433 + +0.3
143,437 + H281DRAFT_04043 0.68 +0.7
143,502 - H281DRAFT_04043 0.75 +0.6
143,569 + H281DRAFT_04043 0.82 -0.3
143,709 - +0.2
143,746 + +0.3
143,746 + +0.1
143,746 + +0.1
143,747 - +0.4
144,203 - H281DRAFT_04044 0.48 +0.6
144,290 + H281DRAFT_04044 0.59 +0.8
144,290 + H281DRAFT_04044 0.59 +1.0
144,290 + H281DRAFT_04044 0.59 +0.2
144,358 + H281DRAFT_04044 0.67 +0.5
144,689 + -0.6

Or see this region's nucleotide sequence