Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04040 and H281DRAFT_04041 are separated by 106 nucleotides H281DRAFT_04041 and H281DRAFT_04042 are separated by 132 nucleotides H281DRAFT_04042 and H281DRAFT_04043 are separated by 77 nucleotides
H281DRAFT_04040: H281DRAFT_04040 - oxygen-independent coproporphyrinogen-3 oxidase, at 139,473 to 140,858
_04040
H281DRAFT_04041: H281DRAFT_04041 - tRNA_Leu_CAA, at 140,965 to 141,049
_04041
H281DRAFT_04042: H281DRAFT_04042 - phenylacetate transporter <small>(from data)</small>, at 141,182 to 142,702
_04042
H281DRAFT_04043: H281DRAFT_04043 - Pimeloyl-ACP methyl ester carboxylesterase, at 142,780 to 143,745
_04043
Position (kb) 141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.220 kb on - strand, within H281DRAFT_04040 at 140.234 kb on + strand, within H281DRAFT_04040 at 140.291 kb on + strand, within H281DRAFT_04040 at 140.331 kb on + strand, within H281DRAFT_04040 at 140.332 kb on - strand, within H281DRAFT_04040 at 140.332 kb on - strand, within H281DRAFT_04040 at 140.338 kb on - strand, within H281DRAFT_04040 at 140.338 kb on - strand, within H281DRAFT_04040 at 140.424 kb on + strand, within H281DRAFT_04040 at 140.493 kb on + strand, within H281DRAFT_04040 at 140.493 kb on + strand, within H281DRAFT_04040 at 140.569 kb on + strand, within H281DRAFT_04040 at 140.569 kb on + strand at 140.569 kb on + strand, within H281DRAFT_04040 at 140.569 kb on + strand, within H281DRAFT_04040 at 140.570 kb on - strand, within H281DRAFT_04040 at 140.661 kb on + strand, within H281DRAFT_04040 at 140.661 kb on + strand, within H281DRAFT_04040 at 140.681 kb on + strand, within H281DRAFT_04040 at 140.814 kb on + strand at 141.099 kb on + strand at 141.100 kb on - strand at 141.516 kb on + strand, within H281DRAFT_04042 at 141.516 kb on + strand, within H281DRAFT_04042 at 141.516 kb on + strand, within H281DRAFT_04042 at 141.516 kb on + strand, within H281DRAFT_04042 at 141.568 kb on + strand, within H281DRAFT_04042 at 141.569 kb on - strand, within H281DRAFT_04042 at 141.570 kb on + strand, within H281DRAFT_04042 at 141.570 kb on + strand, within H281DRAFT_04042 at 141.570 kb on + strand, within H281DRAFT_04042 at 141.570 kb on + strand, within H281DRAFT_04042 at 141.571 kb on - strand, within H281DRAFT_04042 at 141.571 kb on - strand, within H281DRAFT_04042 at 141.571 kb on - strand, within H281DRAFT_04042 at 141.571 kb on - strand, within H281DRAFT_04042 at 141.673 kb on - strand, within H281DRAFT_04042 at 141.673 kb on - strand, within H281DRAFT_04042 at 141.824 kb on - strand, within H281DRAFT_04042 at 142.126 kb on - strand, within H281DRAFT_04042 at 142.213 kb on - strand, within H281DRAFT_04042 at 142.221 kb on + strand, within H281DRAFT_04042 at 142.221 kb on + strand, within H281DRAFT_04042 at 142.221 kb on + strand, within H281DRAFT_04042 at 142.222 kb on - strand, within H281DRAFT_04042 at 142.222 kb on - strand, within H281DRAFT_04042 at 142.222 kb on - strand, within H281DRAFT_04042 at 142.222 kb on - strand, within H281DRAFT_04042 at 142.222 kb on - strand, within H281DRAFT_04042 at 142.264 kb on - strand, within H281DRAFT_04042 at 142.264 kb on - strand, within H281DRAFT_04042 at 142.276 kb on - strand, within H281DRAFT_04042 at 142.314 kb on + strand, within H281DRAFT_04042 at 142.315 kb on - strand, within H281DRAFT_04042 at 142.315 kb on - strand, within H281DRAFT_04042 at 142.320 kb on + strand, within H281DRAFT_04042 at 142.553 kb on + strand at 142.554 kb on - strand at 142.582 kb on + strand at 142.583 kb on - strand at 142.583 kb on - strand at 142.586 kb on + strand at 142.663 kb on - strand at 142.663 kb on - strand at 142.739 kb on + strand at 142.739 kb on + strand at 142.739 kb on + strand at 142.740 kb on - strand at 142.740 kb on - strand at 142.740 kb on - strand at 142.740 kb on - strand at 142.974 kb on + strand, within H281DRAFT_04043 at 142.974 kb on + strand, within H281DRAFT_04043 at 142.974 kb on + strand, within H281DRAFT_04043 at 142.974 kb on + strand, within H281DRAFT_04043 at 142.975 kb on - strand, within H281DRAFT_04043 at 142.975 kb on - strand at 142.975 kb on - strand, within H281DRAFT_04043 at 142.975 kb on - strand, within H281DRAFT_04043 at 142.975 kb on - strand, within H281DRAFT_04043 at 143.007 kb on + strand, within H281DRAFT_04043 at 143.308 kb on + strand, within H281DRAFT_04043 at 143.309 kb on - strand, within H281DRAFT_04043 at 143.309 kb on - strand, within H281DRAFT_04043 at 143.433 kb on + strand at 143.437 kb on + strand, within H281DRAFT_04043 at 143.502 kb on - strand, within H281DRAFT_04043 at 143.569 kb on + strand, within H281DRAFT_04043
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 140,220 - H281DRAFT_04040 0.54 -0.2 140,234 + H281DRAFT_04040 0.55 +0.5 140,291 + H281DRAFT_04040 0.59 -0.2 140,331 + H281DRAFT_04040 0.62 -0.3 140,332 - H281DRAFT_04040 0.62 +0.2 140,332 - H281DRAFT_04040 0.62 +0.0 140,338 - H281DRAFT_04040 0.62 +0.7 140,338 - H281DRAFT_04040 0.62 +0.1 140,424 + H281DRAFT_04040 0.69 +0.4 140,493 + H281DRAFT_04040 0.74 +0.3 140,493 + H281DRAFT_04040 0.74 +0.7 140,569 + H281DRAFT_04040 0.79 +0.5 140,569 + +0.5 140,569 + H281DRAFT_04040 0.79 +0.5 140,569 + H281DRAFT_04040 0.79 -0.2 140,570 - H281DRAFT_04040 0.79 -0.7 140,661 + H281DRAFT_04040 0.86 +0.6 140,661 + H281DRAFT_04040 0.86 +1.8 140,681 + H281DRAFT_04040 0.87 -0.1 140,814 + +0.3 141,099 + +0.4 141,100 - -0.2 141,516 + H281DRAFT_04042 0.22 +0.2 141,516 + H281DRAFT_04042 0.22 +0.0 141,516 + H281DRAFT_04042 0.22 +1.0 141,516 + H281DRAFT_04042 0.22 +0.6 141,568 + H281DRAFT_04042 0.25 +2.3 141,569 - H281DRAFT_04042 0.25 -0.2 141,570 + H281DRAFT_04042 0.26 -0.3 141,570 + H281DRAFT_04042 0.26 -0.2 141,570 + H281DRAFT_04042 0.26 +0.6 141,570 + H281DRAFT_04042 0.26 +0.5 141,571 - H281DRAFT_04042 0.26 +1.1 141,571 - H281DRAFT_04042 0.26 +0.5 141,571 - H281DRAFT_04042 0.26 +0.4 141,571 - H281DRAFT_04042 0.26 -0.0 141,673 - H281DRAFT_04042 0.32 +0.1 141,673 - H281DRAFT_04042 0.32 +0.4 141,824 - H281DRAFT_04042 0.42 +0.8 142,126 - H281DRAFT_04042 0.62 +0.3 142,213 - H281DRAFT_04042 0.68 +0.3 142,221 + H281DRAFT_04042 0.68 -0.3 142,221 + H281DRAFT_04042 0.68 +0.0 142,221 + H281DRAFT_04042 0.68 -0.7 142,222 - H281DRAFT_04042 0.68 +0.1 142,222 - H281DRAFT_04042 0.68 +0.4 142,222 - H281DRAFT_04042 0.68 +0.2 142,222 - H281DRAFT_04042 0.68 -0.0 142,222 - H281DRAFT_04042 0.68 +0.2 142,264 - H281DRAFT_04042 0.71 +0.5 142,264 - H281DRAFT_04042 0.71 -0.9 142,276 - H281DRAFT_04042 0.72 +0.3 142,314 + H281DRAFT_04042 0.74 -0.3 142,315 - H281DRAFT_04042 0.74 +0.1 142,315 - H281DRAFT_04042 0.74 +0.6 142,320 + H281DRAFT_04042 0.75 -0.4 142,553 + +0.7 142,554 - -0.1 142,582 + -2.1 142,583 - +1.2 142,583 - -0.3 142,586 + +1.0 142,663 - +0.5 142,663 - -0.1 142,739 + +0.3 142,739 + -0.1 142,739 + -1.7 142,740 - +1.8 142,740 - +0.3 142,740 - +2.1 142,740 - +0.0 142,974 + H281DRAFT_04043 0.20 +0.1 142,974 + H281DRAFT_04043 0.20 -0.3 142,974 + H281DRAFT_04043 0.20 +0.2 142,974 + H281DRAFT_04043 0.20 -0.0 142,975 - H281DRAFT_04043 0.20 -0.7 142,975 - +1.6 142,975 - H281DRAFT_04043 0.20 +0.1 142,975 - H281DRAFT_04043 0.20 +0.2 142,975 - H281DRAFT_04043 0.20 +0.1 143,007 + H281DRAFT_04043 0.23 -0.1 143,308 + H281DRAFT_04043 0.55 +0.7 143,309 - H281DRAFT_04043 0.55 -0.4 143,309 - H281DRAFT_04043 0.55 -0.7 143,433 + +0.3 143,437 + H281DRAFT_04043 0.68 +0.7 143,502 - H281DRAFT_04043 0.75 +0.6 143,569 + H281DRAFT_04043 0.82 -0.3
Or see this region's nucleotide sequence