Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02892

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02891 and H281DRAFT_02892 are separated by 216 nucleotidesH281DRAFT_02892 and H281DRAFT_02893 are separated by 416 nucleotides H281DRAFT_02891: H281DRAFT_02891 - transcriptional regulator, propionate catabolism operon regulatory protein, at 492,562 to 494,562 _02891 H281DRAFT_02892: H281DRAFT_02892 - carboxyvinyl-carboxyphosphonate phosphorylmutase, at 494,779 to 495,660 _02892 H281DRAFT_02893: H281DRAFT_02893 - drug resistance transporter, EmrB/QacA subfamily, at 496,077 to 497,516 _02893 Position (kb) 494 495 496Strain fitness (log2 ratio) -2 -1 0 1at 494.016 kb on - strand, within H281DRAFT_02891at 494.330 kb on + strand, within H281DRAFT_02891at 494.330 kb on + strand, within H281DRAFT_02891at 494.331 kb on - strand, within H281DRAFT_02891at 494.331 kb on - strand, within H281DRAFT_02891at 494.414 kb on + strandat 494.414 kb on + strandat 494.496 kb on + strandat 494.496 kb on + strandat 494.496 kb on + strandat 494.497 kb on - strandat 494.497 kb on - strandat 494.501 kb on - strandat 494.501 kb on - strandat 494.501 kb on - strandat 494.501 kb on - strandat 494.908 kb on + strand, within H281DRAFT_02892at 494.908 kb on + strand, within H281DRAFT_02892at 495.068 kb on + strand, within H281DRAFT_02892at 495.069 kb on - strand, within H281DRAFT_02892at 495.622 kb on + strandat 495.622 kb on + strandat 495.623 kb on - strandat 495.730 kb on + strandat 495.730 kb on + strandat 495.730 kb on + strandat 495.731 kb on - strandat 495.731 kb on - strandat 495.731 kb on - strandat 495.806 kb on + strandat 495.806 kb on + strandat 495.806 kb on + strandat 495.806 kb on + strandat 495.807 kb on - strandat 495.848 kb on - strandat 495.849 kb on + strandat 495.850 kb on - strandat 495.850 kb on - strandat 495.850 kb on - strandat 495.850 kb on - strandat 495.961 kb on - strandat 495.992 kb on + strandat 496.046 kb on + strandat 496.047 kb on - strandat 496.123 kb on - strandat 496.123 kb on - strandat 496.125 kb on - strandat 496.245 kb on + strand, within H281DRAFT_02893at 496.246 kb on - strand, within H281DRAFT_02893at 496.502 kb on - strand, within H281DRAFT_02893at 496.563 kb on + strand, within H281DRAFT_02893at 496.563 kb on + strand, within H281DRAFT_02893at 496.563 kb on + strand, within H281DRAFT_02893at 496.564 kb on - strand, within H281DRAFT_02893at 496.564 kb on - strand, within H281DRAFT_02893at 496.564 kb on - strand, within H281DRAFT_02893

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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494,016 - H281DRAFT_02891 0.73 -0.0
494,330 + H281DRAFT_02891 0.88 +0.1
494,330 + H281DRAFT_02891 0.88 -0.3
494,331 - H281DRAFT_02891 0.88 -0.3
494,331 - H281DRAFT_02891 0.88 -0.7
494,414 + -0.5
494,414 + -0.2
494,496 + -2.3
494,496 + +0.4
494,496 + -0.3
494,497 - -0.1
494,497 - +0.3
494,501 - +0.2
494,501 - +0.3
494,501 - +0.1
494,501 - -0.3
494,908 + H281DRAFT_02892 0.15 +0.3
494,908 + H281DRAFT_02892 0.15 +0.2
495,068 + H281DRAFT_02892 0.33 -0.6
495,069 - H281DRAFT_02892 0.33 -1.2
495,622 + +0.1
495,622 + -1.2
495,623 - +0.2
495,730 + +0.1
495,730 + +1.3
495,730 + -0.2
495,731 - +0.0
495,731 - +0.2
495,731 - +0.1
495,806 + -0.1
495,806 + -0.2
495,806 + -1.7
495,806 + -0.7
495,807 - -0.3
495,848 - -1.3
495,849 + +0.4
495,850 - -0.5
495,850 - +0.4
495,850 - +0.6
495,850 - +0.2
495,961 - -0.3
495,992 + -0.6
496,046 + -0.1
496,047 - +0.1
496,123 - +0.2
496,123 - -0.0
496,125 - +0.3
496,245 + H281DRAFT_02893 0.12 -0.0
496,246 - H281DRAFT_02893 0.12 +0.1
496,502 - H281DRAFT_02893 0.30 +0.0
496,563 + H281DRAFT_02893 0.34 -1.3
496,563 + H281DRAFT_02893 0.34 +0.3
496,563 + H281DRAFT_02893 0.34 -0.7
496,564 - H281DRAFT_02893 0.34 -0.9
496,564 - H281DRAFT_02893 0.34 +0.2
496,564 - H281DRAFT_02893 0.34 -0.3

Or see this region's nucleotide sequence