Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00967 and H281DRAFT_00968 are separated by 202 nucleotides H281DRAFT_00968 and H281DRAFT_00969 are separated by 208 nucleotides H281DRAFT_00969 and H281DRAFT_00970 are separated by 129 nucleotides
H281DRAFT_00967: H281DRAFT_00967 - assimilatory nitrite reductase (NAD(P)H) large subunit precursor (EC 1.7.1.4), at 1,081,887 to 1,084,427
_00967
H281DRAFT_00968: H281DRAFT_00968 - MFS transporter, NNP family, nitrate/nitrite transporter, at 1,084,630 to 1,085,997
_00968
H281DRAFT_00969: H281DRAFT_00969 - Type IV pili methyl-accepting chemotaxis transducer N-term, at 1,086,206 to 1,086,799
_00969
H281DRAFT_00970: H281DRAFT_00970 - putative Mg2+ transporter-C (MgtC) family protein, at 1,086,929 to 1,087,417
_00970
Position (kb)
1084
1085
1086 Strain fitness (log2 ratio)
-1
0
1
2 at 1083.651 kb on + strand, within H281DRAFT_00967 at 1083.762 kb on + strand at 1083.865 kb on - strand, within H281DRAFT_00967 at 1084.089 kb on + strand, within H281DRAFT_00967 at 1084.158 kb on + strand, within H281DRAFT_00967 at 1084.450 kb on + strand at 1085.433 kb on + strand, within H281DRAFT_00968 at 1086.115 kb on + strand at 1086.499 kb on - strand, within H281DRAFT_00969 at 1086.541 kb on - strand, within H281DRAFT_00969 at 1086.814 kb on + strand at 1086.927 kb on - strand at 1086.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 1,083,651 + H281DRAFT_00967 0.69 +0.7 1,083,762 + +1.8 1,083,865 - H281DRAFT_00967 0.78 -0.1 1,084,089 + H281DRAFT_00967 0.87 -0.7 1,084,158 + H281DRAFT_00967 0.89 -0.8 1,084,450 + +0.3 1,085,433 + H281DRAFT_00968 0.59 -0.9 1,086,115 + +0.1 1,086,499 - H281DRAFT_00969 0.49 +0.2 1,086,541 - H281DRAFT_00969 0.56 -0.4 1,086,814 + +0.7 1,086,927 - +0.7 1,086,927 - -0.2
Or see this region's nucleotide sequence